BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14680.2
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906204 jgi|Araly1|906204|Al_scaffold_0003_3332 2209 0.0
> Ahg906204 jgi|Araly1|906204|Al_scaffold_0003_3332
Length=1890
Score = 2209 bits (1196), Expect = 0.0
Identities = 1298/1348 (96%), Gaps = 4/1348 (0%)
Strand=Plus/Plus
Query 166 ATGGATCTTAATTTAGATGAAAATGAGAATCTAAAGGCTCGGATCAAACAACTTGAACAT 225
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCTTAATTTAGATGAGAATGAGAACCTAAAGGCTCGGATCAAACAACTTGAACAT 60
Query 226 GAGCGTAATGAACTACAGAAAGATATTGAACAGTTGTGCATGCAACAAGGTGGACCTAGC 285
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCGTAACGAACTACAGAAAGATATTGAACAGTTGTGCATGCAACAAGGTGGACCTAGC 120
Query 286 ATTCTTGGTGTGGCTGCTCGGATGCATTTCCAGAGGACAGCTAGCTTGGAGCAGGAAATA 345
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTCTTGGTGTGGCTACTCGGATGCATTTCCAGAGGACAGCTAGCTTGGAGCAGGAAATC 180
Query 346 GAGAGCTTAAAACTGAAGTTGGCTGCTTGCACAAGGGAGAAACACAATCTTCAAGAGGAG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAGCTTAAAACTGAAGTTGGCTGCTTGCACAAGGGAGAAACACAATCTTCAAGAGGAG 240
Query 406 CTTGCAGAAGCTTACCGTGTGAAAGCTCAGTTAGCAGATTTACATGCTGGAGAAGTAGCA 465
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGCAGAAGCTTACCGTGTGAAAACTCAGTTAGCAGATTTACATGCTGGAGAAGTAGCA 300
Query 466 AAGAACTTGGAAGCAGAAAAGCAGGTTAGATTTTTCCAGGGTTCTGTGGCAGCTGCTTTT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAACTTGGAAGCAGAAAAGCAGGTTAGATTTTTCCAGGGTTCTGTGGCAGCTGCTTTT 360
Query 526 TCTGAAAGGGATAAGTCAGTAATGGAGGCCGAAAAAGCTGAAGAGAATGCTGAAATGATG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGAAAGGGATAAGTCAGTAATGGAGGCCGAAAAAGCTGAAGAGAATGCTGAAATGATG 420
Query 586 TCACAGAAACTTAGTGAAATTGAGATGCGGTTGGAAGAACTTAGCTCAGATTGTCTTGTA 645
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 TCCCAGAAACTTGGTGAAATTGAGATGCGGTTGGAAGAACTTAGCTCAGATTGTCTCGTA 480
Query 646 CAGAAGAGACTAAATGACACATTGCAAGCTGACTTGGCAAAACTTGAAGAACAGACTAGA 705
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAGAAGAGACTAAATGACACTTTGCAAGCTGACTTGGCAAAACTTGAAGAACAGACTAGA 540
Query 706 ACATATGCAGGGGTGATTGAGAAGTTCTATGATATCCGTAAAGCTTCACTCTGTGAGTCC 765
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 ACATATGCACAGGTGATTGAGAAGTTCTATGATATCCGTAAAGCTTCGCTCTGTGAGTCC 600
Query 766 CTTGAAATGAGTTTGCATGAA-AAGTGTGCAAGTTTATTGGATGATCCTATAGAATCATG 824
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTGAAATGAGTTTGCAC-AATAAGTGTGCAAGTTTATTGGATGATCCTATAGAATCATG 659
Query 825 GACTTTCAATGATCCTTCAACTTCAGATTATGTAGCTGCACTGGAAGGAGAGTTGGGAAA 884
||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 660 GACGTTCAATGATCCTTCAACATCAGAATATGTAGCTGCACTAGAAGGAGAGTTGGGGAA 719
Query 885 GGTTAAGAACACTGTGGATAATCTTCAGAGTAAATTACGAGTGGGCTTAGAAATTGAGAA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GGTTAAGAACACTGTGGATAATCTTCAGAGTAAATTACGAGTGGGCTTAGAAATTGAAAA 779
Query 945 TCATTTGAAGAAGAGGGTTCGTGCATTGGAAAAGAAGAATATTGTTGCAGATGGGCTGAT 1004
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 780 TCATTTGAAGAAGAGGGTTCGTGCGTTGGAAAAGAAGAATATTGTTGCAGATAGGCTGAT 839
Query 1005 CGTTAATGGCATTACAGATATTCGCCATCATCATTCCCAACTGAGGGCCTACATCATTGC 1064
||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 840 CGTTAGTGGCATTACAGACATACGCCATCACCATTCCCAACTGAGGGCCTACATCATTGA 899
Query 1065 TTTACTTAATGAAGAAGGACTATACATTAAATCGATTTCCAAAAATGTTGAAGAAAAACT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTACTTAATGAAGAAGGACTATACATTAAATCGATTTCCAAAAATGTTGAAGAAAAACT 959
Query 1125 TAAACTTCACTCATCAGAAGTACAGAATGTAGTGCCACCGCAACACGATTTAAAACCTGA 1184
|||||||||||||| ||| ||| |||||||||||||| |||||| ||||| || |||||
Sbjct 960 TAAACTTCACTCATTGGAAATACGGAATGTAGTGCCACTGCAACATGATTTCAAGCCTGA 1019
Query 1185 TGAGTCTGAATGCCGGGATGTGCATATGACTACAGTTGTTGAATCTTGCCAAGTAACGAA 1244
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1020 TGAGTCTGAATGTCGGGATGTGCATATAACTACAGTTGTTGAATCTTGCCAAGTAACTAA 1079
Query 1245 GCTTGCGGAAGCTAGTATTGCCAAAATCATGGCTGAAAGTAGAGGGGATGCATCTGAAGC 1304
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1080 GCTTGCGGAAGCTAGTATTGCCAATATCATGGCTGAAAGTAGAGGGGATACATCTGAAGC 1139
Query 1305 -CTTTGCACAAGCATTACAAGAGAAGGTTGGAGCTCTTTTACTTCTATCACAGCAGGAGG 1363
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1140 ACTT-GCACAAGCATTACAAGAGAAGGTTGGAGCTCTTTTGCTTCTATCACAGCAGGAAG 1198
Query 1364 AGAGGCATTTACATGAAGAAAATGTCAATGCAGCTCTTCAGCAGAAAGTAGATGAGCTTC 1423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1199 AGAGGCATTTACATGAAGAAAATGTCAATGCAGCTCTCCAGCAGAAAGTAGATGAGCTTC 1258
Query 1424 AAAGGAATATCTTGCAGGTGACCAATGAAAAGGTGAGAACCCTTATGGAGTTAGCCCAAC 1483
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1259 AAAGGAATATCTTGCAGGTTACCAACGAAAAGGTGAGAACCCTTATGGAGTTAGCACAAC 1318
Query 1484 TACGACAGGAATATCAGTCGCTAAGAGA 1511
||||||||||||||||||||||||||||
Sbjct 1319 TACGACAGGAATATCAGTCGCTAAGAGA 1346
Score = 835 bits (452), Expect = 0.0
Identities = 515/546 (94%), Gaps = 2/546 (0%)
Strand=Plus/Plus
Query 1580 ACAAAATGAGTGGTACAAGAGAGGAAGAATCAACGGGAAACAGTGGCAGGATA-GTTATC 1638
||||| ||||||||||||| | ||||||| |||||| |||||||||||||||| ||| ||
Sbjct 1346 ACAAATTGAGTGGTACAAGTGGGGAAGAAACAACGGAAAACAGTGGCAGGATAGGTT-TC 1404
Query 1639 TCCAATGAGAAAGATGGAAGACTAAAGAATATGTGGAAGAAATCTTACATAAACCGTTGG 1698
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1405 TCCAATGAGAAAGAGGGAAGACTAAAGAATATGTGGAAGAAGTCTTACATAAACCGTTGG 1464
Query 1699 ATTGACCCAAGTTCAAGAGGCGGAAGTCACTTGAACACTGAAGCAGATTATGCCAGTAAC 1758
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1465 ATTGACCCAAGTTCAAGAGGCGGAAGTCACTTGAACAGTGAAGCAGATTATGCCAGTAAC 1524
Query 1759 ATCGAATATTCCAGAATGAAAGTAGAATATGCAGCTATAAAAGAGAACCTGGAAAGCATG 1818
|| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1525 ATTGATTATTCCAGAATGAAAGTAGAATACGCAGCTATAAAAGAAAACCTGGAAAGCATG 1584
Query 1819 GGGCACTTGACGACTTCAATCCGCAGGCTCCGTCTAGCGCTCTTGAAGGTAAAGGAATTA 1878
|| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1585 GGACACTTGACTAGTTCAATCCGCAGGCTTCGTCTAGCGCTCTTGAAGGTAAAGGAATCG 1644
Query 1879 AATGATACTGAAACAACTGCAAGAAGTTGCGAAGTAGCGATTGCCAACATCCTTGTGGAG 1938
|||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1645 AATGATACGGAAACAACTGCGAGAAGTTGCGAAGTAGCGATTTCCAACATCCTTGTGGAG 1704
Query 1939 GCAACCCATTTGAAGACTGCCCTTGGGATCTCCATACCAATTAGCTGGTCGGCGGAATCA 1998
||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1705 GCAACCCATTTAAAGACTGCCCTTGGCATCTCTATACCCATTAGCTGGTCGGCGGAATCA 1764
Query 1999 GACATTGAATCAGTTACTGATGGCGAGTCGAGCTGTGAAAGGACCGATTCTGTTTCTGCT 2058
|| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1765 GATATGGAATCAGTTACTGATGGCGAATCGAGCTGTGAAAGGACGGATTCTGTTTCTGCT 1824
Query 2059 GCAGGATTTGAGATGGTGGAGCTTGTTATTCTAGCAGCCGAGATAATGAAAGAACAACAC 2118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GCAGGATTTGAGATGGTGGAGCTTGTTATTCTAGCAGCCGAGATAATGAAAGAACAACAC 1884
Query 2119 CATTGA 2124
||||||
Sbjct 1885 CATTGA 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86541036640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5