BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14690.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480358 jgi|Araly1|480358|fgenesh2_kg.3__3059__AT2G14690.1 2597 0.0
> Ahg480358 jgi|Araly1|480358|fgenesh2_kg.3__3059__AT2G14690.1
Length=1784
Score = 2597 bits (1406), Expect = 0.0
Identities = 1665/1791 (93%), Gaps = 14/1791 (1%)
Strand=Plus/Plus
Query 29 TTGTCACAAGAAAAGATGAAAAGATTCAACTATGGCTTTTTCCACTTGGTGCTTTTCCTC 88
|||||||||| ||||||||| ||||||||| ||||||||||||| |||||| |||| |||
Sbjct 1 TTGTCACAAGTAAAGATGAAGAGATTCAACAATGGCTTTTTCCAGTTGGTGTTTTTTCTC 60
Query 89 ATCTCTCTTCTTCTTCTTGGTTCAGGAATTTGCATGGATCCTTTCTCCTACGACCAGTCT 148
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ATCTCTCTTCCTCTTCTTGGTTCAGGGCTTTGCATGGATCCTTTCTCCTACGACCAGTCT 120
Query 149 CTAAAATCAGAGTGCCTCATGGAGCCTCCACAAACAACTGCCAATACCGGAGGTGAAGGA 208
|| |||||||||||||||||||||||||||||||||||| |||||||| ||| | |||
Sbjct 121 TTACAATCAGAGTGCCTCATGGAGCCTCCACAAACAACTGGCAATACCGTAGGACAGGGA 180
Query 209 GT-CAAAGAATTGAAGATCAACGAAAATGGTGGAATCAGAAATGTAGTAGAGGGAGTTGA 267
| ||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||
Sbjct 181 -TCCAAAGAATTCAAGATAAACGAAAGTGGTGGAATCAGAAATGTAGTAGAGAGAGTTGA 239
Query 268 TCTTCGGGAAGGAAACATATACATCACTTCTGCTTGGGTGAAGTTGAGAAATGAGAGTCA 327
||||| ||||||||||||||| | | ||||||||||||||||||||||||||| |||||
Sbjct 240 TCTTCAGGAAGGAAACATATATAGCGTTTCTGCTTGGGTGAAGTTGAGAAATGAAAGTCA 299
Query 328 GAGAAAAGTAGGAATGACTTTTAGTGAGAAGAATGGGAGAAACGTTTTCGGAGGTGAAGT 387
||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 300 GAGGAAAGTAGGAATGACTTTTAGGGGGAAGAATGGGATAAACGTTTTCGGAGGTGAAGT 359
Query 388 TATGGCGAAAAGAGGATGCTGGTCTTTGCTTAAAGGCGGTATTACCGCTGATTTCTCTGG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TATGGCGAAAAGAGGATGCTGGTCTTTGCTTAAAGGCGGTATTACCGCTGATTTCTCAGG 419
Query 448 CCCTATCGACATTTTCTTCGAGAGCGATGGCTTAGCGGGTTTGGAGATATCAGTACAAAA 507
||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 420 CCCTATCGACATTCTCTTCAAGAGCGATGGCTTAGCGGCCTCGGAGATATCAGTACAAAA 479
Query 508 TGTGAGGATGCAACGGTTCCACAAAACTCAATGGAGGCTACAACAAGACCAAGTTATTGA 567
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 480 TGTGAGGATGCAACGGTTCAACAAAACTCAATGGAGGCTACAACAAGACCAAATAATTGA 539
Query 568 AAAGATTCGGAAGAATAAAGTGAGATTTCAAATGAGTTTTAAGAACAAAAGTGCATTAGA 627
||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
Sbjct 540 AAAGATTCGGAAGAATACAGTGAGATTTCAGATGAGTTTTCAGAACAAAAGCGCATTAAA 599
Query 628 AGGATCAGTGATTTCCATAGAACA-GATCAAACCATCATTCCTCCTTGGTTGTGCTATGA 686
|||||| ||||| ||||||||||| | |||||||||||||| ||||||| ||||||||||
Sbjct 600 AGGATCGGTGATATCCATAGAACAAG-TCAAACCATCATTCATCCTTGGCTGTGCTATGA 658
Query 687 ACTACCGTATTTTGGAAAGCGATAGCTATAGAGAATGGTTTGTGTCGCGGTTTAGACTCA 746
||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 659 ACTACCGAATTTTGGAAAGTGATAGCTATAAAGAATGGTTTGTGTCGCGGTTTAGACTAA 718
Query 747 CTTCATTCACCAATGAAATGAAATGGTATGCAACTGAGGCAGTGAGAGGTCAAGAGAACT 806
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTTCCTTCACAAATGAAATGAAATGGTATGCAACTGAGGCAGTGAGAGGTCAAGAGAACT 778
Query 807 ACAAAATAGCTGATTCAATGATGCAGCTCGCGGAGGAAAATGCGATTCTAGTTAAAGGAC 866
||||| ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||
Sbjct 779 ACAAATTAGCTGATTCAATGATGCAGCTCGCGGCGGAAAATGGGGTTCTAGTAAAAGGAC 838
Query 867 ATACGGTCTTGTGGGACGATAAGTATTGGCAGCCGAATTGGGTAAAGACGATCACGGATC 926
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 839 ATACGGTCTTGTGGGACGATAAGTATTGGCAGCCAAATTGGGTTAAGACGATCACGGATC 898
Query 927 CTGAAGATTTAAAGAATGTGACACTCAACAGAATGAACTCGGTTATGAAGAGATATAAAG 986
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 899 CTGAAGATTTGAAGAATGTGACACTCAACCGAATCAACTCGGTTATGAAGAGATATAAAG 958
Query 987 GGAGACTAATAGGATGGGATGTGATGAATGAGAATGTACATTTCAACTACTTTGAGAACA 1046
| ||| || | |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 959 GAAGATTAGTTGGATGGGATGTGATGAATGAGAATGTGCATTTCAACTACTTCGAGAACA 1018
Query 1047 TGCTTGGTGGAAACGCTTCAGCTATTGTCTACTCTTTGGCCTCTAAG-TTGGATCCTGAT 1105
||||||| ||||||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 1019 TGCTTGGGGGAAACGCTTCAGCTATTGTCTACTCTTTGGCCTCCACGATTG-ATCCTGAT 1077
Query 1106 ATACCGTTGTTCCTAAACGAATTCAACACGGTAGAGTATGATAAAGACAGAGTTGTGAGC 1165
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1078 ATACCGTTGTTCCTGAACGAATTCAACACGGTAGAGTATGCTAAAGACAGAGTTGTGAGC 1137
Query 1166 CCTGTTAACGTGGTAAAGAAGATGCAAGAGATTGTTTCATTCCCTGGAAACAATAATATT 1225
||||||||| |||| |||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 1138 CCTGTTAACATGGTGAAGAGGATGCAAGAGATTGTTTCATTCCCAGGAAACAGTAATATT 1197
Query 1226 AAAGGAGGGATTGGAGCACAAGGTCACTTTGCTCCAGTTCAGCCCAACTTGGCTTACATG 1285
|||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1198 AAAGGAGGAATTGGAGCACAAGGTCACTTTGCTCCAATTCAGCCAAACTTGGCTTACATG 1257
Query 1286 AGATACGCATTAGATACATTAGGCTCTTTGAGTTTTCCGGTTTGGCTTACGGAGGTTGAT 1345
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1258 AGATCCGCATTAGATACATTAGGCTCTTTGGGTTTTCCGGTTTGGCTTACGGAGGTGGAT 1317
Query 1346 ATGT-TCAAGTGCCCGGATCAGGTAAAATACATGGAGGATATTCTGAGGGAAGCTTACTC 1404
||| | |||| |||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1318 ATGGAT-AAGTTCCCGGATCAGGTTAAATACATGGAGGAAATTCTTAGGGAAGCTTACTC 1376
Query 1405 ACATCCTGCGGTTAAAGCCATAATCCTATATGGAGGGCCTGAAGTGTCCGGTTTCGACAA 1464
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1377 GCATCCTGCGGTTAAAGCCATAATCCTATATGGAGGGCCTGAAGTGTCCGGTTTCAACAA 1436
Query 1465 GTTAACGCTTGCCGATAAAGATTTCAAAAACACACA-AGCAGGGGATCTCATTGACAAAT 1523
|||||||||||||||||||||||||| |||||| | | |||||||||||||||||| |
Sbjct 1437 ATTAACGCTTGCCGATAAAGATTTCAACAACACAGACAT-AGGGGATCTCATTGACAATT 1495
Query 1524 TACTCCAAGAGTGGAAACAAGAACCTGTAGAGATTCCTATCCAACACCATGAACATAATG 1583
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TACTCCGAGAGTGGAAACAAGAACCTGTAGAGATTCCTATCCAACACCATGAACATAATG 1555
Query 1584 ATGAAGAAGGA-GGTCGAATAATCGGGTTTTCTCCGGAGATTTCCTTACTGCATGGACAT 1642
||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1556 ATGAAGAAG-ACGGTCCAATAATCGGGTTTTCTCCAGAGATTTCCTTACTGCATGGACAT 1614
Query 1643 TACCGAGTGACTGTAACTAATCCATCGATGAAGAACTTGTCCACCCGCTTCAGCGTGGAG 1702
||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1615 TACAGAGTGACTGTAACTAATCCAACGATGAAGAACTTGTCCACCAGCTTCAGCTTGGAG 1674
Query 1703 GTAACTAAGGAG-TCAGGTCATCTTCAAGAAGTTCAACTTGTAATTGATGCTTGAAAACT 1761
|||||||||||| | || |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1675 GTAACTAAGGAGATGAG-TCATCTTCAAGAGGTTCAACTTGTACTTGATGCTTGAAAACT 1733
Query 1762 GCACTATATTATGTATCACATATTGTGAATCATCCCATGAGAGGTTATACA 1812
| |||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 1734 GAACTATATTATGTATCATATATTGTGAATCATCCTATGAGAGATTATACA 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5