BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14710.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319461 jgi|Araly1|319461|fgenesh1_pm.C_scaffold_3002477 883 0.0
Ahg319463 jgi|Araly1|319463|fgenesh1_pm.C_scaffold_3002479 656 0.0
Ahg479123 jgi|Araly1|479123|fgenesh2_kg.3__1824__AT3G16580.1 388 5e-107
Ahg913058 jgi|Araly1|913058|Al_scaffold_0001_3312 243 4e-63
> Ahg319461 jgi|Araly1|319461|fgenesh1_pm.C_scaffold_3002477
Length=1050
Score = 883 bits (478), Expect = 0.0
Identities = 874/1054 (83%), Gaps = 72/1054 (7%)
Strand=Plus/Plus
Query 287 GTTGATTGAAGAGATACTCTCTCGTGTCCCACCTAAATCTCTCGTTCGCTTCAGAACCGT 346
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 30 GTTGATTGAAGAGATACTCTCTCGTGTCCCACCTAAATGTCTTGTTCGCTTCAGAACCGT 89
Query 347 ATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGTTCATCAACAACCACAAGATGAC 406
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 ATCGAAACAATGGAACACTCTTTTCGACGACAAGACGTTCATCAACAACCACAAGATGAC 149
Query 407 GTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCATCGATCCCGTGAT 466
|||||| || ||| |||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 150 GTTTCGATTCATCCTAGCAACCAAATACAGGATTTATTCGGTAAGCATCGATCCCGTAAT 209
Query 467 AGT-G-G-TACGTGAGTTACCCTTAGGTATTCCAGGTTTAGAATCTTTGGAACTTAATAA 523
|| | | ||||||| || ||||||||| ||| || |||| |||| ||||||| ||
Sbjct 210 TGTTGTGGTACGTGACATAACCTTAGGTACTCCCGGGTTAG---CTTTCAAACTTAAAAA 266
Query 524 CTTGGTTGATTGCAATGAGTTGTTGGTATGTGTTAAGAACAATGGTGCGGTTGTTTGGAA 583
||||||||||||||||| ||||||| |||||| ||||| ||||| || |||||||||||
Sbjct 267 CTTGGTTGATTGCAATGGGTTGTTGCTATGTGGCAAGAATAATGGAGCCGTTGTTTGGAA 326
Query 584 CCCTTGGTTGGGACAGAGTAGATGGATCCAGCCGAGTTTAAACCATTCTCCTATGGTATT 643
|||||||||||| || |||||||||||| ||||||||||||| ||||||| |||| |||
Sbjct 327 CCCTTGGTTGGGGCAAAGTAGATGGATCGAGCCGAGTTTAAAACATTCTCGTATGA-ATT 385
Query 644 -CGACGGCATTGTATACGACAATAAGAAGTACAAGAT-G--G-TT-G-C---T----T-- 687
||| || || | |||||||||||||| |||||||| | | || | | | |
Sbjct 386 TCGAAGGTATAGGATACGACAATAAGACTTACAAGATCGCTGCTTCGTCCCCTGGGATCA 445
Query 688 --T-T-----TCTGG-CTTGTGGAAAATCTATGACTTTTCCTCCGATGTGTGGATAGACC 738
| | ||| | |||||||| ||||||||| ||| |||| ||||||||||||||||
Sbjct 446 AATATCCCAATCTTGACTTGTGGACAATCTATGAATTTGCCTCTGATGTGTGGATAGACC 505
Query 739 ACAAGTCAAAATCTACTAATAGTAACACAAACGTGATTA-ATGTTCAAACTGCTGTAT-G 796
|| | || || || |||| | | | | | || | || | ||| || ||||| |
Sbjct 506 ACGACCCAGAACCTGGTAATGG---CGGTAGCAT-AT-ACAT-TG-AAAGTGTTGTATCG 558
Query 797 CTTGAATGGAAATTTGTATTGGGTTTGTTTTCGTGAAAAGACTGATCCCTTGTGCTACCA 856
|||||||||| ||||||||||||||||| || | | |||| |||||||||||||||||
Sbjct 559 -TTGAATGGAACTTTGTATTGGGTTTGTTCTCATTACGAGACCGATCCCTTGTGCTACCA 617
Query 857 CATTCATAAA-TTCGG-TTTCTCGAACAGCAT-ATGGGTGAGATTTTGTAACCTACCTTT 913
|||| | ||| |||| ||| || | | | || || | ||||||||| | ||||| |
Sbjct 618 CATT-AGAAAATTCGACTTT-TCCAGCGG-ATTATTCATAAGATTTTGTGATCTACCATG 674
Query 914 TGGGAGAAACCATGATGGGGATGCTCTTGTCCTTGGTG-TCTTTAGAGGAGATCGGTTTT 972
||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 675 CGGGAGAAACCATGATGGGGATGCTCTTGTCCTTGG-GATCTTTAGGGGAGATCGGTTTT 733
Query 973 CGTTGCTAAAGCAATGCATGGTGACAAAGAAGATTGAGGTTTTTGTGACCGAGAACAAGA 1032
|||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 734 CGTTGCTAAAGCAATGCATGGTAACAAAGAAGATTGATATTTGGGTGACCGAGAACAAGA 793
Query 1033 TTAACCATGAGAATGGTGATGACGTGGTTTGGAAGAATTTCATGA-CTTTTTCAAGTCCT 1091
|||| ||| ||||||| || |||||||||| ||||||||||| ||||| ||||||||
Sbjct 794 TTAA---TGAAAATGGTGCGGATGTGGTTTGGATGAATTTCATGAACTTTT-CAAGTCCT 849
Query 1092 AACTTGCCTGATTTAGTAGAGACGGTAAAATTCTCTAATCCAAGTTACTTCATCGAAGGT 1151
|||||||| |||||| || | | || || ||||||||||||||||||| |
Sbjct 850 AACTTGCCGGATTTA-TA----C--T------CT--AAGCCAAGTTACTTCATCGAAGAT 894
Query 1152 AAAAGGCTTGTGGTGTGCTCTCGTGACAACACTGGTCACGCTTGGATCTATATACTGGGG 1211
|||||||| |||||||||||| | ||| ||||||||| ||||||||||||||| |||||
Sbjct 895 AAAAGGCTCGTGGTGTGCTCTTGCGACGACACTGGTCGTGCTTGGATCTATATATTGGGG 954
Query 1212 GATAGTAAGTTGATCAGTAAAACTCGTATAGAGTGTGTGGTTGATCCTTGGCCTTT-GCA 1270
|||| |||||||||||||||| || |||| | ||||||||||||||||| ||||| |||
Sbjct 955 GATAATAAGTTGATCAGTAAATTTCATATATATTGTGTGGTTGATCCTTG-CCTTTTGCA 1013
Query 1271 CTGTACCTTTGTTCCCAGTTTGGTACCGGTTCCT 1304
|||||||||| |||||||||||||||||||||||
Sbjct 1014 CTGTACCTTTATTCCCAGTTTGGTACCGGTTCCT 1047
> Ahg319463 jgi|Araly1|319463|fgenesh1_pm.C_scaffold_3002479
Length=969
Score = 656 bits (355), Expect = 0.0
Identities = 489/554 (88%), Gaps = 7/554 (1%)
Strand=Plus/Plus
Query 798 TTGAATGGAAATTTGTATTGGGTTTGTTTTCGTGAAAAGACTGATCCCTTGTGCTACCAC 857
|||||||||| ||||||||||||||||| || ||| |||| | ||||||||||||||||
Sbjct 418 TTGAATGGAACTTTGTATTGGGTTTGTTCTCATGACGAGACCGTTCCCTTGTGCTACCAC 477
Query 858 ATTCA-TAAATTCGGTTTCTCGAACAGCA-TATGGGTGAGATTTTGTAACCTACCTTTTG 915
||| | ||||||| ||| |||| | | | ||| | ||||||||| | ||||| | |
Sbjct 478 ATT-AGAAAATTCGATTTTTCGAGC-GGATTATTCATAAGATTTTGTGATCTACCATGCG 535
Query 916 GGAGAAACCATGAT-G--GGGATGCTCTTGTCCTTGGTGTCTTTAGAGGAGATCGGTTTT 972
||||||||||| || | | ||||||||||||||||| |||||||| |||||||||||||
Sbjct 536 GGAGAAACCATAATAGTAGCGATGCTCTTGTCCTTGGGGTCTTTAGGGGAGATCGGTTTT 595
Query 973 CGTTGCTAAAGCAATGCATGGTGACAAAGAAGATTGAGGTTTTTGTGACCGAGAACAAGA 1032
|||||||||||||||||||||| ||||||||||||||| ||| ||||| | ||||||||
Sbjct 596 CGTTGCTAAAGCAATGCATGGTAACAAAGAAGATTGAGATTTGGGTGACTGTGAACAAGA 655
Query 1033 TTAACCATGAGAATGGTGATGACGTGGTTTGGAAGAATTTCATGACTTTTTCAAGTCCTA 1092
||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 656 TTAACCATGAGGATGGTGATGATGTGGTTTGGATGAATTTCATGACCTTTTCAAGTCCTA 715
Query 1093 ACTTGCCTGATTTAGTAGAGACGGTAAAATTCTCTAATCCAAGTTACTTCATCGAAGGTA 1152
||||||| ||||||||||| || |||| | | || ||||||||||||||||||||| ||
Sbjct 716 ACTTGCCGGATTTAGTAGACACCGTAACCTACACTGATCCAAGTTACTTCATCGAAGATA 775
Query 1153 AAAGGCTTGTGGTGTGCTCTCGTGACAACACTGGTCACGCTTGGATCTATATACTGGGGG 1212
| ||||| |||||||||||| | |||||||||||| ||||||||||||||||| ||||||
Sbjct 776 AGAGGCTCGTGGTGTGCTCTTGGGACAACACTGGTTACGCTTGGATCTATATATTGGGGG 835
Query 1213 ATAGTAAGTTGATCAGTAAAACTCGTATAGAGTGTGTGGTTGATCCTTGGCCTTTGCACT 1272
||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 836 ATAATAAGTTGATCAGTAAAACTCGTATAGATTGTGTTGTTGATCCTTGGCCTTTGCACT 895
Query 1273 GTACCTTTGTTCCCAGTTTGGTACCGGTTCCTGCTCCATGCCGAAGAGAAGAACAAGCAG 1332
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 896 GTACCTTTGTCCCCAGTTTGGTACCGGTTCCTGCTCGATGCCGAAGAGAAGAACGGGCAG 955
Query 1333 AATTACAAGTTTAG 1346
||||||| ||||||
Sbjct 956 AATTACACGTTTAG 969
Score = 309 bits (167), Expect = 4e-83
Identities = 193/206 (94%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 265 ATCTGAAAAACCTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCTAAAT 324
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 11 ATCTGAAGAAGCTTCCATGGGAGTTGATCGAAGAGATACTCTCTCGTGTCCCACCTAAAT 70
Query 325 CTCTCGTTCGCTTCAGAACCGTATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGT 384
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CTCTTGTTCGCTTCAGAACCGTATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGT 130
Query 385 TCATCAACAACCACAAGATGACGTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATT 444
|||| ||| |||||| |||||||||||| || ||| |||||||| |||||| | ||||||
Sbjct 131 TCATGAACCACCACAGGATGACGTTTCGATTCATCCTAGCAACCGAATCCATGGTTTATT 190
Query 445 CGGTAAGCATCGATCCCGTGATAGTG 470
||||||||||||||||||||||||||
Sbjct 191 CGGTAAGCATCGATCCCGTGATAGTG 216
> Ahg479123 jgi|Araly1|479123|fgenesh2_kg.3__1824__AT3G16580.1
Length=1338
Score = 388 bits (210), Expect = 5e-107
Identities = 298/340 (88%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 276 CTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCTA-AATCTC-TCGTTC 333
|||||||||||||| |||||||||||||| |||||||||||||| | |||||| || |||
Sbjct 19 CTTCCATGGGAGTTAATTGAAGAGATACTTTCTCGTGTCCCACC-AGAATCTCTTC-TTC 76
Query 334 GCTTCAGAACCGTATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGTTCATCAACA 393
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 77 GCTTCAAAACCGTATCAAAACAATGGAACGCTCTCTTCGACGACAAGACGTTCATCAACA 136
Query 394 ACCACAAGATGACGTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 453
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 137 ACCACAAGACGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 196
Query 454 TCGATCCCGTGATAGTGGTACGTGAGTTACCCTTAGGTATTCCAGGTTTAGAATCTTTGG 513
|||||||| ||||| ||| |||||||| |||||| |||||| ||| |||||||| |
Sbjct 197 TCGATCCCAAGATAGCGGTGTGTGAGTTAACCTTAGATATTCCCGGTCTAGAATCTCAG- 255
Query 514 A-ACTTAATAA-CTTGGTTGATTGCAATGAGTTGTTGGTATGTGTTAAGAACAATGGTGC 571
| |||||| || |||||||||| |||||||||||||| |||||| | | | || || ||
Sbjct 256 ATACTTAA-AAGCTTGGTTGATGGCAATGAGTTGTTGCTATGTGACATGGAGAAAGGAGC 314
Query 572 GGTTGTTTGGAACCCTTGGTTGGGACAGAGTAGATGGATC 611
|| ||||||||||| ||| || |||| ||||||||||||
Sbjct 315 TGTGGTTTGGAACCCGTGGCTGAGACATAGTAGATGGATC 354
> Ahg913058 jgi|Araly1|913058|Al_scaffold_0001_3312
Length=1158
Score = 243 bits (131), Expect = 4e-63
Identities = 285/359 (79%), Gaps = 12/359 (3%)
Strand=Plus/Plus
Query 276 CTTCCATGGGAGT-TGATTGAAGAGATACTCTCTCGTGTCCCACCTAAATCTCTCGTTCG 334
||||||||||| | || | |||||||| || ||||||||||| |||| ||||| || ||
Sbjct 19 CTTCCATGGGA-TATGGTGGAAGAGATCCTATCTCGTGTCCCTCCTACTTCTCTTGTCCG 77
Query 335 CTTCAGAACCGTATCG-AAACAATGGAACGCTCTTTTCGACGACAAGACGTTCATCAACA 393
||||||||||| | | |||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 78 ATTCAGAACCGT-TTGCAAACGATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACA 136
Query 394 ACCACAAGATGACGTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 453
|||||||||||||||||| ||||| ||| |||| | ||||||||||||||||||||||
Sbjct 137 ACCACAAGATGACGTTTCAATTTATTTTAACAACTACATCCAAGATTTATTCGGTAAGCG 196
Query 454 TCGATCCCGTGATAGTGGTACGTGAGTTACCCTTAGGTATTCCAGGTTTAGAATCTTTGG 513
|| | ||| | ||| ||| ||||||||| ||||| || ||| |||||| || ||
Sbjct 197 TCAAACCCAAGGTAGAGGTGCGTGAGTTAACCTTAAATACTCCCGGTTTAAAAGCTCAA- 255
Query 514 A-ACTT-AATAACTTGGTTGATTGCAATG-AGTTGTTGGTATGTGTTAAGAACAATGGTG 570
| || | ||| |||||||||| || || | || ||| | |||| | ||||| |
Sbjct 256 ATACCTGAATT-CTTGGTTGATACCAGTGGA-TTCTTGCTTTGTGACGTGGGTAATGGAG 313
Query 571 CGGTTGTTTGGAACCCTTGGTTGGGACAGAGTAGATGGATCCAGCC-GAGTTTAAACCA 628
| || ||||||||||||||||| |||||| |||||| ||| |||| ||| |||| |||
Sbjct 314 CTGTGGTTTGGAACCCTTGGTTAAGACAGACTAGATGCATCGAGCCCGAGGTTAA-CCA 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5