BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14750.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480365 jgi|Araly1|480365|fgenesh2_kg.3__3066__AT2G14750.1 1537 0.0
> Ahg480365 jgi|Araly1|480365|fgenesh2_kg.3__3066__AT2G14750.1
Length=1006
Score = 1537 bits (832), Expect = 0.0
Identities = 927/973 (95%), Gaps = 6/973 (1%)
Strand=Plus/Plus
Query 63 TTCTTATATTTTATTTCCTCCACCACCGTGAGATATGATCGCCGCCGGAGCTAAATCGCT 122
||||| | |||||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 36 TTCTTCTTTTTTATTTCCCCCACCACCGTGAAATATGATTGCCGCCGGAGCTAAATCGCT 95
Query 123 ATTAGGGCTTTCGATGGCTTCTCCAAAAGGGATTTTCGATAGCAATTCAATGAGTAATTC 182
||| ||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 96 ATTTGGGCTTTCGATTGCTTCTCCAAAAGGGCTTTCCGATAACAATTCAATGAGTAATTC 155
Query 183 AAGATCTGTTGTTGTTGTTCGTGCTTGTGTTTCTATGGATGGATCTCAAACTCTGAGTCA 242
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 156 AAGATCTGTTGTTGTTGTTCGTGCTTGTGTTTCTATGGATGGATCACAAACTCTGAGTCA 215
Query 243 TAACAAAAATGGATCTATTCCTGAGGTTAAATCCATTAACGGTCACACGGGACAAAAGCA 302
|| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 216 TAGCAAAAATGGATCTATTCCTGAGCTTAAATCGATTAACGGTCACACGGGACAAAAGCA 275
Query 303 AGGACCTTTGTCTACGGTCGGAAACTCGACAAATATAAAGTGGCATGAATGTTCTGTTGA 362
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 276 AGGTCCTTTGTCTACGGTCGGAAACTCGACAAACATAAAGTGGCATGAGTGTTCTGTTGA 335
Query 363 GAAAGTTGATAGACAGAGATTGCTTGATCAGAAAGGATGTGTGATTTGGGTCACCGGTCT 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GAAAGTTGATCGACAGAGATTGCTTGATCAGAAAGGATGTGTGATTTGGGTCACCGGTCT 395
Query 423 TAGTGGTTCAGGGAAGAGTACTTTGGCTTGTGCTTTGAATCAGATGTTGTATCAAAAGGG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TAGTGGTTCAGGGAAGAGTACTTTGGCTTGTGCTTTGAATCAGATGTTGTATCAAAAGGG 455
Query 483 GAAGCTTTGTTATATTCTTGATGGTGATAATGTTAGGCATGGCTTAAACCGTGATCTTAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GAAGCTTTGTTATATTCTTGATGGTGATAATGTTAGGCATGGCTTAAACCGTGATCTTAG 515
Query 543 CTTTAAAGCTGAGGATCGTGCAGAGAATATTCGTAGAGTTGGAGAGGTTGCTAAGCTTTT 602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 516 CTTTAAAGCTGAGGATCGTGCAGAGAATATTCGTAGAGTCGGAGAGGTTGCTAAGCTCTT 575
Query 603 TGCGGATGCTGGAATAATCTGCATTGCGAGTTTGATATCTCCTTATAGAACAGATAGGGA 662
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 576 TGCGGATGCCGGAATCATCTGCATTGCTAGTTTGATATCTCCTTATAGAACAGACAGGGA 635
Query 663 CGCTTGTCGAAGTTTGCTCCCCGAGGGAGATTTTGTTGAGGTGTTCATGGATGTACCGCT 722
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 636 CGCTTGTCGAAATTTGCTCCCCGAGGGAGATTTTGTCGAGGTGTTCATGGATGTACCGCT 695
Query 723 T-AGTGTTTGCGAGGCGAGGGATCCAAAGGGTCTTTACAAGCTTGCTCGTGCAGGAAAGA 781
| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 696 TGAA-GTTTGCGAGGCGAGGGATCCCAAGGGTCTTTACAAGCTCGCTCGTGCAGGAAAGA 754
Query 782 TCAAAGGTTTTACCGGGATCGATGACCCTTACGAGCCACCATTGAACTGCGAGATTTCTC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TCAAAGGTTTTACCGGGATCGATGACCCTTACGAGCCACCATTGAACTGCGAGATTTCTC 814
Query 842 TAGGACGTGAAGGA--GG-AACTTCTCCTATCGAAATGGCGGAAAAGGTCGTCGGATACT 898
||||||| |||||| || ||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 815 TAGGACGCGAAGGATCGGGAACTTCTCCAATCGAAATGGCTGAAAAGGTCATCGGATACT 874
Query 899 TAGATAACAAGGGTTATCTTCAAGCATAACATACTTCTAGATACACAAATTTGTTATCTC 958
|||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |
Sbjct 875 TAGATAACAAGGGTTATCTTCAGGCATAACATACTT-TAGCTACACAAATTTGTTATCCC 933
Query 959 ACGGTCTTAGTTCTATTTTACGAGCCAAAGTATAAAAGTAAGCAAATCCATGGCTGTTTT 1018
|||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 934 ACGGTCATAGTTCTATTTAACAAGCCAAAGTATAAAATTAAGCAAATCCATGGCTGTTTT 993
Query 1019 ATGGAATCACAAG 1031
|||||||||||||
Sbjct 994 ATGGAATCACAAG 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5