BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14760.3
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480366 jgi|Araly1|480366|fgenesh2_kg.3__3067__AT2G14760.1 1197 0.0
Ahg491291 jgi|Araly1|491291|fgenesh2_kg.7__724__AT4G33880.1 255 5e-67
> Ahg480366 jgi|Araly1|480366|fgenesh2_kg.3__3067__AT2G14760.1
Length=1235
Score = 1197 bits (648), Expect = 0.0
Identities = 723/760 (95%), Gaps = 2/760 (0%)
Strand=Plus/Plus
Query 86 ATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATATATACAGAGGAAGCTGAC 145
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATTTATACAGAGGAAGCTGAC 60
Query 146 TTTATGAATCAGCTCCTTGCCTCCTATGAGCAACCTTGTGGCGGTTCATCTTCAGAGACA 205
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTATGAATCAGCTTCTTGCATCCTATGAGCAACCTTGTGGCGGTTCATCTTCAGAGACA 120
Query 206 ACCGCCACACTCACGGCCTACCACCACCAGGGTTCTCAATGGAATGGTGGCTTTTGCTTC 265
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 121 ACCGCCACACTCGCGGCCTACCACCACCAGAGTTCTCACTGGAATGGTGGCTTTTGCTTC 180
Query 266 TCTCAGGAGAGCAGTAGTTATAGTGGTTACTGCGCGGCGATGCCACGGCAAGAAGAAGAT 325
|| || |||||||| ||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 181 TCCCAAGAGAGCAGCAGTTACAGTGGTTACTGCACGGTGATGCCACGGCAAGAAGAAGAC 240
Query 326 AACAATGGGATGGAGGACGCGACAATCAACACGAACTTGTACCTT-GTTGGTGAAGAGAC 384
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 241 AACAATGGGATGGAAGACGCGACAATCAACACGAACTTGTA-CTTAGTTGGTGAAGAGAC 299
Query 385 AAGTGAATGTGATGCGACGGAATACTCCGGTAAAAGCCTCTTGCCTTTGGAGACTGTCGC 444
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 AAGTGAATGTGATGTGACGGAATACTCCGGTAAAAGCATCTTGCCTTTGGAGACTGTCGC 359
Query 445 AGAAAACCACGACCATAGTATGCTACAGCCTGAGAACTCCTTGACCACGACCACTGATGA 504
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 360 AGAAAACCACGACCATAGTATGCTACAGCCTGAGAACTCCTTGACAAAGACCACTGATGA 419
Query 505 GAAAATGTTCAACCAATGTGAGAGTTCAAAGAAGAGGACGCGTGCCACAACAACTGATAA 564
|||| ||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 420 GAAACTGTTCAACCCATGTGAGAGTTCTAAGAAGAGGACTCGTGCCACATCAACTGATAA 479
Query 565 GAACAAGAGAGCCAACAAGGCACGAAGGAGCCAGAAATGCGTAGAGATGAGTGGCGAAAA 624
||| |||||||||||||||||||| |||||||| ||| || |||||||||||||||| ||
Sbjct 480 GAATAAGAGAGCCAACAAGGCACGGAGGAGCCAAAAAGGCATAGAGATGAGTGGCGATAA 539
Query 625 TGAAAATAGCGGCGAAGAAGAATATACGGAGAAGGCTGCGGGGAAGAGAAAGACCAAACC 684
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TGAAAATATCGGCGAAGAAGAATATACGGAGAAGGCTGTAGGGAAGAGAAAGACCAAACC 599
Query 685 ACTTAAGCCGCAAAAGACTTGTTGTTCGGATGACGAATCAAACGGTGGAGACACTTTCTT 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTAAGCCGCAAAAGACTTGTTGTTCGGATGACGAATCAAACGGTGGAGACACTTTCTT 659
Query 745 GTCCAAAGAAGATGGCGAGGACTCTAAGGCTCTCAACCTCAACGGCAAGACTAGGGCCAG 804
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 GTCCAAAGAAGATGGCGAGGACTCTAAGGCTCTCAACCTCAACGGCAAGACAAGGGCCAG 719
Query 805 CCGCGGCGCGGCCACAGATCCTCAAAGCCTTTACGCAAGG 844
||||||||| ||||||||||||||||||||||| ||||||
Sbjct 720 CCGCGGCGCTGCCACAGATCCTCAAAGCCTTTATGCAAGG 759
Score = 747 bits (404), Expect = 0.0
Identities = 458/483 (95%), Gaps = 7/483 (1%)
Strand=Plus/Plus
Query 883 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTCGTCCCTAATGG 942
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 759 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTTGTCCCTAATGG 818
Query 943 AACAAAGGTTGATATTAGCACGATGTTGGAAGAAGCAGTACAATACGTCAAATTTCTACA 1002
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 819 AACAAAGGTACATATTAGCACGATGTTGGAAGAAGCAGTACAATACGTCAAATTTTTGCA 878
Query 1003 GCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCTATTGCTTACAA 1062
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 879 GCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCCATTGCTTACAA 938
Query 1063 CGGAATGGACATTGGCCTTGACCTAAAACTCAATGCACTGACCAGATGATTCAAGAGACA 1122
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 939 CGGAATGGACATTGGCCTTGACCTAAAACTCAATGCACTGACAAGATGATTCAAGAGACA 998
Query 1123 CCTTCGGATTTTAATTCTATTTATTtatatatatatatataATTTAATACTAGAGATATG 1182
|||||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 999 CCTTCGGATTTTTATTTTATTTATATATATATATATAAATAATTTAATACGAGAGATATG 1058
Query 1183 AAGAGTCACATTTTGACGTTTTATACTCTAAATATTATTTTA-TATTTGTATGTCGAGTT 1241
||||||||||||| |||||||||||||| || |||||||||| | |||||||||||||||
Sbjct 1059 AAGAGTCACATTT-GACGTTTTATACTCCAA-TATTATTTTACT-TTTGTATGTCGAGTT 1115
Query 1242 ATGTCCAACAAtttttttGATTCTTGAGATATATATTGGTGTACGATCATCGTTTTGATA 1301
|||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1116 ATGTCCAACAGTTTTT--GATTCTTGAGATATATATTGATGTACGATCATCTTTTTGATA 1173
Query 1302 ATGGATTCGTTTATTTTATCTCttttttttGTTTGAATTATTTGATTCGTTTACGTCATA 1361
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1174 ATGGATTTGTTTATTTTATTTCTTTTTTT-GTTTGAATTATTTGATTCGTTTACGTCATA 1232
Query 1362 CAC 1364
|||
Sbjct 1233 CAC 1235
> Ahg491291 jgi|Araly1|491291|fgenesh2_kg.7__724__AT4G33880.1
Length=1267
Score = 255 bits (138), Expect = 5e-67
Identities = 177/196 (90%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 883 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTCGTCCCTAATGG 942
|||||||||||| ||||| |||||||| |||||||||| ||| ||||||||||||||||
Sbjct 927 GAAAAGAAGAGAAAGGATTAACGAGAGATTAAGGATTTTACAAAATCTCGTCCCTAATGG 986
Query 943 AACAAAGGTTGATATTAGCACGATG-TTGGAAGAAGCAGTACAATACGTCAAATTTCTAC 1001
||||||||||||||| || |||||| || || ||||| || || |||||||||||| | |
Sbjct 987 AACAAAGGTTGATATCAGTACGATGCTT-GAGGAAGCTGTTCATTACGTCAAATTTTTGC 1045
Query 1002 AGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCTATTGCTTACA 1061
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1046 AGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCAATTGCTTTCA 1105
Query 1062 ACGGAATGGACATTGG 1077
|||| |||||||||||
Sbjct 1106 ACGGGATGGACATTGG 1121
Score = 69.4 bits (37), Expect = 6e-11
Identities = 87/109 (80%), Gaps = 11/109 (10%)
Strand=Plus/Plus
Query 83 AAAATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATATA---T-A--CA--- 133
|||||||||||||||||||||||||||||| ||| || ||||| || | | ||
Sbjct 82 AAAATGGAAGCCATGGGAGAATGGAGCACCAACCTCGGAGGAATGTACACTTATGCAACC 141
Query 134 GAGGAAGCTGACTTT-ATGAATCAGCTCCTTGCCTCCTATGAGCAACCT 181
||||| || || ||| ||||| |||||||||||||| ||||| || |||
Sbjct 142 GAGGAGGCCGA-TTTCATGAACCAGCTCCTTGCCTCTTATGATCATCCT 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5