BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14830.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480370 jgi|Araly1|480370|fgenesh2_kg.3__3071__AT2G14830.1 1696 0.0
Ahg497545 jgi|Araly1|497545|fgenesh2_kg.878__1__AT2G14830.1 1491 0.0
> Ahg480370 jgi|Araly1|480370|fgenesh2_kg.3__3071__AT2G14830.1
Length=1338
Score = 1696 bits (918), Expect = 0.0
Identities = 1215/1351 (90%), Gaps = 50/1351 (4%)
Strand=Plus/Plus
Query 25 tcctcctcctcTTCTCCGCCGAAAGAAGTTGCAGATGAAACACAAGACTGGATACTCGGA 84
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 19 TCCTCCTCCTCTTCTCCGCCGGAAGAAGTTGCAGATGAAACACAAGACTGGATACTCGGA 78
Query 85 GCCGGGTCGGGTTGGGTCGAAGCTCGTAAAACTTGCGATCACTTGAACACTTTATCTCCC 144
|||||||||||||||||||||||||||| | |||||||||||||||||||| | ||||||
Sbjct 79 GCCGGGTCGGGTTGGGTCGAAGCTCGTACATCTTGCGATCACTTGAACACTCTCTCTCCC 138
Query 145 GATTTACTTCACTTACCAACTCCTGATACTCCTTGTTCTAGATACAAACGAACAGAACAC 204
||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 139 GATTTACTTCACTTACCAACTCCTGATACTCCTTG---T---T---------C---A-A- 178
Query 205 GATACAATGTTTTGTTTTTTATTCGGATGGCGAAGAACCTCCAAGTGTAAGAGTGTGGTC 264
|| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct 179 GA-ACAATGTTTTGTTTTTTGTTCGGATGGAGAAAAACCTCCAAGTGTAAGAGTGTAGTG 237
Query 265 AAACAGCTTCAGTGTCGTCTAAACCTACTCAAGAACAAGAAATACGCTATTTCTTCACAT 324
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 238 AAACAGCTTCAATGTCGTCTAAAGCTACTCAAGAACAAGAAATACGCCATTTCTTCACAT 297
Query 325 TTACGTAACGACATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGT 384
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTACGAAACGATATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGT 357
Query 385 GCTCAACAACTCTTCCTTGATGAGAATCT-AATGTCTCTCTACCACTTGTTGCTTCACTT 443
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 358 GCTCAACAACTCTTCCTTGATGAGAG-CTTAATGTCTCTCTACCACTTGTTGCTTCACTT 416
Query 444 CTCCGACATAATCCTTCT-CAACCTCTCTTACATCCGGAGACGTAGAGACCTTCCTGATG 502
||||||||| ||||| || ||||||||||||||| || |||| ||||||||||||| |||
Sbjct 417 CTCCGACATTATCCT-CTTCAACCTCTCTTACATTCGAAGACATAGAGACCTTCCTAATG 475
Query 503 GCATCAATGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCGAGATGTGGAGACTTGCCTG 562
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 GCATCAACGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCTAGATGTGGAGACTTGCCTG 535
Query 563 AGCTACGAGCCTTAAGGGTACTTTTTGGCAAGCGTTATGGGAATCACTTTGTGGACACGG 622
||||||||||||| ||| | |||||||| | ||||||||||| ||||||||||||||||
Sbjct 536 AGCTACGAGCCTTGAGGATTCTTTTTGGTGATCGTTATGGGAAACACTTTGTGGACACGG 595
Query 623 CTCTTAATCTTCTGCCTGGTAATTGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAA 682
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 596 CTCTTAATCTCCTGCCTTGTAATCGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAA 655
Query 683 TCTCAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGTGGAAGAGTATAACC 742
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 656 TCACAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGCGGAAGAGTACAATC 715
Query 743 TTCGTCTAGAGGTGTTGGCAATCGAATACACTCCCGAATTTCACAAACAGGTACTAA-AA 801
||||| |||| || ||||| ||||||| ||||| |||||||||||||||||| || ||
Sbjct 716 TTCGTTTAGAAGTTTTGGCGCTCGAATATACTCCAGAATTTCACAAACAGGTAA-AAGAA 774
Query 802 AGCGAGAAGGCAGAAGAAGAGAAAGAAGTCATGAGTTCCAATTCTGCTCAGCCGTACTGT 861
|||||| | | |||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 775 AGCGAGTATGTAGAAGAAGAGAAAGAAGTCATGGGTACCGATTCTGCTCAGCCGTG-TG- 832
Query 862 TCATCACAAAAGGCTGAGAGTGAAGCAGAAGTGTATAAGTTTACTCTCACGGATGCGGAT 921
|||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 833 -CATCACAAAAGGCTGATAGCGAAACAGAAGTGTATAAGTTTACTCTCACGGATGCGGAT 891
Query 922 ATAGAGGAAAACCAAGAACAAGAAAG----A--AAAGTATGTGA-TGAGGAAGATGATTG 974
| ||||||||| |||| ||| |||| | |||| || | | ||| || ||||||||
Sbjct 892 ACAGAGGAAAAACAAGCGCAACAAAGTCGTAGTAAAGCAT-TAAGTGATGAGGATGATTG 950
Query 975 CATAGAGGAAGAAGTGGTGgaagaagatcagagtgtattcagatttagagagagtactga 1034
|||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||
Sbjct 951 CATAGAGGAAGAAGTGGTGGAAAAAGATCAGAGTGTATTCAGATTCATAGAGA---CTGA 1007
Query 1035 agatgagagaaaagagagaaagagGTTAAGGAGGAAACCAAGATCAAC-T--TCATCATC 1091
||| |||| ||||||||||||||||| |||||| ||| |||||||| | | ||||||||
Sbjct 1008 AGAAGAGAAAAAAGAGAGAAAGAGGTCAAGGAGAAAATCAAGATCATCATCATCATCATC 1067
Query 1092 AAGCAGTCCTATCGCGAAAGACGTGGATTGTTGGAGGTACTATTACAAGGGAAAGAGAAG 1151
||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1068 AAGCAGTCCAATCGCGAAAGACATGGAATGTTGGAGGTACTACTACAAGGGAAAGAGAAG 1127
Query 1152 TCGTCAAAGGAAAGAGTGTGGTAAATGTTGTTACCATATAGTGTACAACGTGTTTACAAT 1211
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1128 TCGTCAAAAGAAAGAGTGTGGTAAATGTT---ACCATATAGTGTACAACGTGTTTACAAT 1184
Query 1212 GTTGCCGGATCAAAAGGAAAGCGAAGAAGGAGAAAGAAGTTTCAAAAAAGCTATGCATGT 1271
||| |||||||||||||||||||||||||| |||| |||||| || ||||||||||||||
Sbjct 1185 GTTTCCGGATCAAAAGGAAAGCGAAGAAGGCGAAAAAAGTTTGAAGAAAGCTATGCATGT 1244
Query 1272 TCATCCTAAGCTTCCCGATTATGATCAGATTGTTGCTCACTTCACTGCTCTTAGGaaaca 1331
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1245 TCATCCTAAGCTTCCCGACTATGATCAGATTGTTGCTCACTTTACTGCTCTTAGGAAACA 1304
Query 1332 acaacaacaaaaacaaaaGCATATGCGTTCA 1362
|||||||||| || ||| ||||||||||||
Sbjct 1305 ACAACAACAACAA-AAA--CATATGCGTTCA 1332
> Ahg497545 jgi|Araly1|497545|fgenesh2_kg.878__1__AT2G14830.1
Length=1146
Score = 1491 bits (807), Expect = 0.0
Identities = 1046/1158 (90%), Gaps = 30/1158 (3%)
Strand=Plus/Plus
Query 208 ACAATGTTTTGTTTTTTATTCGGATGGCGAAGAACCTCCAAGTGTAAGAGTGTGGTCAAA 267
||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| || |||
Sbjct 1 ACAATGTTTTGTTTTTTGTTCGGATGGAGAAAAACCTCCAAGTGTAAGAGTGTAGTGAAA 60
Query 268 CAGCTTCAGTGTCGTCTAAACCTACTCAAGAACAAGAAATACGCTATTTCTTCACATTTA 327
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CAGCTTCAATGTCGTCTAAAGCTACTCAAGAACAAGAAATACGCCATTTCTTCACATTTA 120
Query 328 CGTAACGACATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGTGCT 387
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAAACGATATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGTGCT 180
Query 388 CAACAACTCTTCCTTGATGAGAATCT-AATGTCTCTCTACCACTTGTTGCTTCACTTCTC 446
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 CAACAACTCTTCCTTGATGAGAG-CTTAATGTCTCTCTACCACTTGTTGCTTCACTTCTC 239
Query 447 CGACATAATCCTTCT-CAACCTCTCTTACATCCGGAGACGTAGAGACCTTCCTGATGGCA 505
|||||| ||||| || ||||||||||||||| || |||| ||||||||||||| ||||||
Sbjct 240 CGACATTATCCT-CTTCAACCTCTCTTACATTCGAAGACATAGAGACCTTCCTAATGGCA 298
Query 506 TCAATGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCGAGATGTGGAGACTTGCCTGAGC 565
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 TCAACGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCTAGATGTGGAGACTTGCCTGAGC 358
Query 566 TACGAGCCTTAAGGGTACTTTTTGGCAAGCGTTATGGGAATCACTTTGTGGACACGGCTC 625
|||||||||| ||| | |||||||| | ||||||||||| |||||||||||||||||||
Sbjct 359 TACGAGCCTTGAGGATTCTTTTTGGTGATCGTTATGGGAAACACTTTGTGGACACGGCTC 418
Query 626 TTAATCTTCTGCCTGGTAATTGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAATCT 685
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTAATCTCCTGCCTTGTAATCGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAATCA 478
Query 686 CAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGTGGAAGAGTATAACCTTC 745
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 479 CAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGCGGAAGAGTACAATCTTC 538
Query 746 GTCTAGAGGTGTTGGCAATCGAATACACTCCCGAATTTCACAAACAGGT-ACTA-----A 799
|| |||| || ||||| ||||||| ||||| ||||||||||||||||| ||| |
Sbjct 539 GTTTAGAAGTTTTGGCGCTCGAATATACTCCAGAATTTCACAAACAGGTTACTCTTTGCA 598
Query 800 AAAGCGAGAAGGCAGAAGAAGAGAAAGAAGTCATGAGTTCCAATTCTGCTCAGCCGTACT 859
|||||||| | | |||||||||||||||||||||| || || ||||||||||||||| |
Sbjct 599 AAAGCGAGTATGTAGAAGAAGAGAAAGAAGTCATGGGTACCGATTCTGCTCAGCCGTG-T 657
Query 860 GTTCATCACAAAAGGCTGAGAGTGAAGCAGAAGTGTATAAGTTTACTCTCACGGATGCGG 919
| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 658 G--CATCACAAAAGGCTGATAGCGAAACAGAAGTGTATAAGTTTACTCTCACGGATGCGG 715
Query 920 ATATAGAGGAAAACCAAGAACAAGAAAG----A--AAAGTATGTGA-TGAGGAAGATGAT 972
||| ||||||||| |||| ||| |||| | |||| || | | ||| || ||||||
Sbjct 716 ATACAGAGGAAAAACAAGCGCAACAAAGTCGTAGTAAAGCAT-TAAGTGATGAGGATGAT 774
Query 973 TGCATAGAGGAAGAAGTGGTGgaagaagatcagagtgtattcagatttagagagagtact 1032
|||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||
Sbjct 775 TGCATAGAGGAAGAAGTGGTGGAAAAAGATCAGAGTGTATTCAGATTCATAGAGA---CT 831
Query 1033 gaagatgagagaaaagagagaaagagGTTAAGGAGGAAACCAAGATCAAC-T--TCATCA 1089
||||| |||| ||||||||||||||||| |||||| ||| |||||||| | | ||||||
Sbjct 832 GAAGAAGAGAAAAAAGAGAGAAAGAGGTCAAGGAGAAAATCAAGATCATCATCATCATCA 891
Query 1090 TCAAGCAGTCCTATCGCGAAAGACGTGGATTGTTGGAGGTACTATTACAAGGGAAAGAGA 1149
||||| ||||| || |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 892 TCAAGTAGTCCAATTGCGAAAGACGTGGAATGTTGGAGGTACTACTACAAGGGAAAGAGA 951
Query 1150 AGTCGTCAAAGGAAAGAGTGTGGTAAATGTTGTTACCATATAGTGTACAACGTGTTTACA 1209
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 952 AGTCGTCAAAAGAAAGAGTGTGGTAAATGTT---ACCATATAGTGTACAACGTGTTTACA 1008
Query 1210 ATGTTGCCGGATCAAAAGGAAAGCGAAGAAGGAGAAAGAAGTTTCAAAAAAGCTATGCAT 1269
||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1009 ATGTTTCCGGATCAAAAGGAAAGCGAAGAAGGCGAAAGAAGTTTGAAGAAAGCTATGCAT 1068
Query 1270 GTTCATCCTAAGCTTCCCGATTATGATCAGATTGTTGCTCACTTCACTGCTCTTAGGaaa 1329
||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1069 GTTCATCTTAAGCTTCCCGACTATGATCAGATTGTTGCTCACTTTACTGCTCTTAGGAAA 1128
Query 1330 caacaacaacaaaaacaa 1347
|||||||||||| |||||
Sbjct 1129 CAACAACAACAACAACAA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5