BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14835.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931216 jgi|Araly1|931216|scaffold_303673.1 1762 0.0
> Ahg931216 jgi|Araly1|931216|scaffold_303673.1
Length=1072
Score = 1762 bits (954), Expect = 0.0
Identities = 1033/1072 (96%), Gaps = 2/1072 (0%)
Strand=Plus/Plus
Query 131 TCTGATCTTGTCGTTTCGCAATGGTGGTCTGCAAATGCAAAAAGGCTACCAGGCTGTATT 190
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1 TCTGATCTTGTCGTTTTGCAATGGTGGTCTGCAAATGCAGAAAGGCTACCAAGCTGTATT 60
Query 191 GCTTTGTTCACAAGGCCCCTGTTTGCGGCGAATGCATTTGTTTCCCGGAGCATCAAACTT 250
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 61 GCTTTGTTCACAAGGTCCCTGTTTGCGGGGAATGCATTTGTTTCCCGGAGCATCAAACCT 120
Query 251 GTGTGGTCCGGACGTATTCAGAATGGGTGATAGATGGAGAGTATGATCAGCCAAAGTGTT 310
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 GTGTGGTCCGGACTTATTCAGAATGGGTGATAGATGGAGAATATGACCAGCCAAAGTGTT 180
Query 311 GTCAATGCCAAGCAACATTTGATGAGGGGGCAGGTCATCAAGTCACTCGGTTAGGTTGCT 370
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GTCAATGCCAAGCAACATTTGATGAGGGGGCAGGTCATCAAGTCACTCGGTTGGGTTGCT 240
Query 371 TGCATGCTATACATACAAGCTGCCTGGTTTCGCTTATCAAGAGTTTTCCTCCTCATACTG 430
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGCATGCTATACATACAAGTTGCCTGGTTTCGCTTATCAAGAGTTTTCCTCCTCATACTG 300
Query 431 CACCTGCTGGTTATGTGTGCCCAGCATGTAGCACACCTATATGGCCTCCTATGATGGTAA 490
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 301 CACCTGCTGGTTATGTGTGCCCATCATGTAGCACACCTATATGGCCTCCTAAGATGGTAA 360
Query 491 AAGATGCAGGATCTCGGCTTCATGCTCTGTTAAGGGAAGTAATTACGCAGACTGGTCTTG 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGATGCAGGATCTCGGCTTCATGCTCTGTTAAGGGAAGTAATTACGCAGACTGGTCTTG 420
Query 551 AGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCCCACCAC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCCCACCAC 480
Query 611 CGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGGGA 670
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGGGA 540
Query 671 ATAACCTTCCTGATGGTTATTCAGTAGCTGGAAATGGAGAATATTCCAAATCTGCGGTTT 730
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct 541 ATAACCTTCCTGATGGTTATTCAGTAGATGGAAACGGAGAATATTCCAAACCTGCGGTTT 600
Query 731 CAGAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAGTTACATGAAAAGCTCAAGCC 790
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 CAGAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAATTACATGAAAAGCTCAAGCC 660
Query 791 CTGGACTTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCG 850
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 661 CTGGACTTGCTGCTGCTGCTGCACGTAAAGGAGTACCCGCTGTGGACAGGCAGAACTCCG 720
Query 851 AGACTCTATATTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAGGTC 910
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 AGACTCTATATTATGCGGACGATGAAGACGGGAATCGTAAAAAGTACTCAAGAAGAGGTC 780
Query 911 CTCTTC-GTCACAAGTTTCTACGAGCTTTACTACCTTTCTGGTCTAGTGCATTACCAACT 969
|| ||| |||||||| ||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 781 CT-TTCCGTCACAAGGTTCTACGGGCTTTACTACCTTTCTGGTCAAGTGCCTTACCAACT 839
Query 970 CTACCCGTGACAGCACCACCTCGTAAGGATGCAGCAAAGGCAGATGATGGTTCTGAAGGT 1029
||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 840 CTACCCGTGACTGCACCACCTCGTAAGGATGCAACGAAGGCAGACGATGGTTCTGAAGGC 899
Query 1030 CGTGTAAGGCATCAACGATCATCAAAAATGGATATAAGGAAGATACTAATTTTCATAGCT 1089
||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 900 CGTGTAAGGCATCAACGGTCATCAAGAATGGATATAAGGAAAATACTAATTTTCATAGCT 959
Query 1090 CTCATAGCGTGTATGGCAACAATGGGGATTTTATACTACAGACTCGCACTACAGGCAATT 1149
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 CTCATAGCGTGTATGGCAACAATGGGGATTTTATACTACAGACTTGCACTACAGGCAATT 1019
Query 1150 GGTCAAGAACTACCCGATGAGGAGCAGCGATGAGGTAATATCGTATCAGACA 1201
||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 GGTCAAGAATTACCCGATGAGGAGCAGCGATGAGGTAATATCTTATCAGACA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5