BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14850.1
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480373 jgi|Araly1|480373|fgenesh2_kg.3__3074__AT2G14850.1 1790 0.0
> Ahg480373 jgi|Araly1|480373|fgenesh2_kg.3__3074__AT2G14850.1
Length=1339
Score = 1790 bits (969), Expect = 0.0
Identities = 1231/1353 (91%), Gaps = 35/1353 (3%)
Strand=Plus/Plus
Query 16 gaaaaaacacttcttcttcttcttcaacaacaacaaaa-cCCAATTTCGCGGCTAAATCA 74
||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 1 GAAGAAACACTTCTTCTTCTTCTTCAACAA-AAAAAAACCCCAATTTCGCGGCTAAATCA 59
Query 75 ATCGCTTCTTCTACT-GGTCTTGGAA-TTGAGAGAA-GAGACC-AGT-TTCGCTGGATCT 129
||||||||| || | |||||||||| ||||||||| |||||| | | || | || |
Sbjct 60 ATCGCTTCTACT-GTAGGTCTTGGAATTTGAGAGAAGGAGACCAAATATT-G--AGA-AT 114
Query 130 TTGAATGAAGCTGGATTTGGATTAA-GTTCAGGTGTAAA-TTTGTTGGAAGATGGGGTCA 187
||| ||||||||||||||||| || |||||||| ||| |||||||||||||||| |||
Sbjct 115 TTGGATGAAGCTGGATTTGGA--AATTTTCAGGTGGAAATTTTGTTGGAAGATGGGTTCA 172
Query 188 GATCAATGTTTTTCGAGATTGAATTCACTTGAGATTAAAGCCCTAATTTATCAGAAAATT 247
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 173 GATCAATGTTTTTCGAGATTGAATACACTTGAGATTAAAGCCCTAATTTATCAGAAAATT 232
Query 248 GGGCATCAGAGAGCTGACACTTACTTCGACCAGCTCGGAAAATTCCTTACCTCGAGGATA 307
||| ||||||||||||| |||||||||| |||||||| || ||||||||||||||||||
Sbjct 233 GGGTATCAGAGAGCTGATACTTACTTCGGTCAGCTCGGTAACTTCCTTACCTCGAGGATA 292
Query 308 AGCAAGTCCGAGTTCGATAAGCTATGTAGCAAGACGGTTGGTAGAGAGAACATTTCTCTA 367
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGCAAGTCGGAGTTTGATAAGCTATGTAGCAAGACGGTTGGTAGAGAGAACATTTCTCTA 352
Query 368 CACAACCGTCTTGTACGTTCGATTCTGAAGAATGCAAGTGTTGCTAAGTCTCCACCGCCG 427
|| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 353 CATAACCGTCTAGTACGTTCAATTCTCAAGAATGCAAGTGTTGCTAAATCTCCACCACCG 412
Query 428 AGGTATCCGAAGAAATCTCTTTACGGGGATCCCGTGTTTCCTCCTTCGCCGAGGAAATGC 487
|| |||||||||||||||||||| |||||| | | ||| |||||||||||||||||||||
Sbjct 413 AGATATCCGAAGAAATCTCTTTATGGGGATTCTGCGTTCCCTCCTTCGCCGAGGAAATGC 472
Query 488 AGGTCGAGGAAGTTTAGAGACCGGCCTAGTCCTCTTGGTCCACTTGGGAAGCCTCAAAGT 547
||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct 473 AGGTCGAGGAAATTTAGAGATCGGCCTAGTCCGCTTGGTCCGCTTGGGAAGCCTCAGAGT 532
Query 548 CTCACTACTACGAATGATGAGTCAATGTCAAAGGCTCAAAGACTTCCTATGGAAGTTGTC 607
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 533 CTCACTACTACGAATGATGAGTCAATGTCAAAGGCACAAAGACTTCCAATGGAAGTTGTC 592
Query 608 TCTGTTGAAGATGGAGAAGAAGTTGAGCAAATGACGGGTAGTCCGAGTGTGCAAAGCAGA 667
||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 593 TCTGTGGAAGAAGGAGAAGAAGTTGAGCAAATGACGGGAAGTCCGAGTGTGCAGAGCAGA 652
Query 668 AGCCCCTTAACCGCTCCACTCGGTGTTTCTTTCCATCTTAAGAGCAAAGCTAGAT--T-T 724
|||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| | |
Sbjct 653 AGCCCCTTAACCGCTCCACTTGGTGTTTCTATCCATCTTAAGAGCAGAGCTAGAAAGTCT 712
Query 725 AGTA-C-GT--A--CAATGGTATCAACCGTGAGACGTGTCAAAGCAGCGGGGAGTTACCT 778
||| | || | |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 713 AGTTTCAGTTCATACAATGGTATCAACCGTGAGACGTGTCAAAGCAGCGGCGAGCTACCT 772
Query 779 GATATGATAAC-ATTGAGAGCTCGGTTAGAGAAGAAATTGGAGATGGAAGGGATAAAGTT 837
|||| ||||| || |||||||||||| | || |||||||||||||||||||||||||||
Sbjct 773 GATACAATAACGAT-GAGAGCTCGGTTGGTGAGGAAATTGGAGATGGAAGGGATAAAGTT 831
Query 838 ATCTATGGACTCTGCTAATCTTCTTAATCGTGGGTTGAATGCATATATGAGAAGGCTGAT 897
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 832 ATCTATGGACTCTGCTAATCTTCTTAATAGTGGATTGAATGCATATATGAGAAGGCTGAT 891
Query 898 CGAGCCTTGTTTGAGTTTAGCAAGTCAACAAAAGCGAGCGGTGTCTAATGTATCGATGTT 957
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 892 CGAGCCTTGTTTGAGTTTAGCCAGTCAACAAAAGCGAGCGGTATCTAATGTATCAATTTT 951
Query 958 GGATTTCCATGCCGCCATGGAGGTT-AATCCCCGGGTTCTTGGAGAGGAATGGCCTATAC 1016
|||||||| ||| || |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 952 GGATTTCCGTGCTGCAATGGAG-TTGAATCCCCGGGTTCTTGGAGAGGAATGGCCTATAC 1010
Query 1017 AGCTAGAAAAGATCTGTTGCCGTGCTTCTGAAGAGTAAAGTTGTAGAAAAAACGCCGTAA 1076
| ||||| ||||| |||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1011 ATCTAGAGAAGATATGTTACCGTGCTTCCGAAGAGTAAAGTTGTAGAAAAA-CGCCGTAA 1069
Query 1077 TTTAGCGATACACCGATTATCATATTTGATTGACAGATTTGGTTCCTTTGCCTGAGATTC 1136
|||||| |||||||||| ||| |||||||||||||||||| | ||| | ||||||||||
Sbjct 1070 TTTAGCAATACACCGAT-ATCGTATTTGATTGACAGATTTTATACCTGTACCTGAGATTC 1128
Query 1137 TTTCCTTTGGATTTGAGTGGAATTGCAATTAGAAATTTCTTGAGGAAGCTTTGAATGGGA 1196
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1129 TTTCCTT-GGATTTGCGTGGAATTGCAATTAGAGATTTCTTGAGGAAGCTTTGAA-GGGA 1186
Query 1197 AACAAAGGTTCTTGGGATTGTACAAGTTCTGATAGATATAATATAGTTTAAATACC-ATT 1255
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1187 AACAAAGATTCTTGGGGTTGTACAAGTTCTGATAGATATAATATAGTTTAAATACCCATT 1246
Query 1256 TGTTTAGGTGATATCTTTACTTTTTT-CTGTATTTTTTCCTCACGTCTAATGTAACAAAT 1314
||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1247 TGTTTAGCAGATATCTGCACTTTTTTTCTGTATTTTTTCCTCATGTCTAATGTAACAAAT 1306
Query 1315 TTTCCATGAAAGCAAAAGAAAGTTTTAGCAGTT 1347
||||||| ||||||||||||| |||||||||||
Sbjct 1307 TTTCCATTAAAGCAAAAGAAAATTTTAGCAGTT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50474742108
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5