BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14860.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480374 jgi|Araly1|480374|fgenesh2_kg.3__3075__AT2G14860.1 1360 0.0
Ahg491288 jgi|Araly1|491288|fgenesh2_kg.7__721__AT4G33905.1 501 4e-141
> Ahg480374 jgi|Araly1|480374|fgenesh2_kg.3__3075__AT2G14860.1
Length=977
Score = 1360 bits (736), Expect = 0.0
Identities = 915/997 (92%), Gaps = 29/997 (3%)
Strand=Plus/Plus
Query 1 AGTCATCATCAAAGCTTTCTGATACCTG---AACAACAACAACAACCCCTAAAATCTCGG 57
||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 1 AGTCATCATCAAAGCTTCCTAATACCTGAACAACAACAACAACAACCCCTAAAATCTCGG 60
Query 58 AAGCCATAATGAGCAGAGCATTGTTCAGGAACGTAGCCGTCGACACCGCTCGGCTCATAC 117
|||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct 61 AAGCCAGAATGAGCAGAGCATTGTTCAGGCACGTGGCCGTCGACACCGCCCGGCTCATAC 120
Query 118 GGCGGAACGCGGCGGCGTCAACAGACCAATATGGTAAGACCGGAGTTGCTCAATCGAGAC 177
|| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GGAGGAACACGGCGGCGTCAACAGACCGGTATGGTAAGACCGGAGTTGCTCAATCGAGAC 180
Query 178 CTTATTTCCGGTCACGTCAGCTTCTCGAAAGAGCAAAAGAAACAGGAGTCTCACCTTCTC 237
|||| || | | | | | |||||||||||||||||||||||||||||||
Sbjct 181 CTTA-TT----T--C--C-G------G--AGAGCAAAAGAAACAGGAGTCTCACCTTCTC 222
Query 238 CTTCTTTGGGTTTCTCTTCTTCTTCATCTCCGTCGA----G-GA-TTGGGTTCGTTGGAT 291
||||||||||||||||||||||||||||| |||||| | | |||||||| ||||||
Sbjct 223 CTTCTTTGGGTTTCTCTTCTTCTTCATCTGCGTCGATTTCGAAAGTTGGGTTCCTTGGAT 282
Query 292 GGTATCTTGGTATGGTTAAATCACACCCAGTTGTGACCAAAAGTGTCACTTCCTCTCTTA 351
|||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 283 GGTATCTTGGTATGGTTAAATCACGCCCAGTTGTGACCAAAAGTATCACTTGCTCTCTTA 342
Query 352 TTTACATTGCCGCCGACTTGTCTTCTCAGACGATTGCGAAAACTTCTTCTGAGTCTTATG 411
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||
Sbjct 343 TTTACATTGCCGCCGACTTGTCTTCTCAGACAATTTCGAAAACTTCCTCTGAGTCATATG 402
Query 412 ACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCAACACTTC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 ACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCAACACTTC 462
Query 472 ACTACTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACAACGTTTA 531
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ACTATTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACAACGTTTA 522
Query 532 AGAAAATGGCTATGGGACAGACGATCTACGGGCCTATTATGACTGTTATTTTCTTCTCAT 591
|||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct 523 AGAAAATGGCTATGGGACAGGCGATCTACGGGCCTACCATGACCGTTATTTTCTTCTCAT 582
Query 592 TGAATGCATCCCTACAAGGGGAACGCGGTTCAGTTATACTTGCCAGATTGAAAAGGGACT 651
| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 583 TAAACGCATCCCTACAAGGGGAAAGCGGTTCAGATATACTTGCCAGATTGAAAAGGGACT 642
Query 652 TACTCCCCGCGCTCTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTTATCACATTCA 711
||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 643 TACTCCCTGCGATGTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTTATAACATTCA 702
Query 712 GATTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCATTTTCGTATGTATGGACTA 771
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 703 GATTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCGTTTTCGTATGTATGGACAA 762
Query 772 TCTACATGACTTACATGGCAAACCGTGAAAAACCAGTCGCAATTTCAACCTGAAACACTC 831
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 763 TCTACATGACTTACATGGCAAACCGTGAAAAACCAGTCGCAATTTCAAGCTGAAACACTC 822
Query 832 ACATATCTTCTACATCGACTCGGGCAATGCCTCCCTTAGTGCTCAGTTATCGCCACATCA 891
|| ||| ||| |||||| |||| ||| ||||||||||||||||||||| |||| |||||
Sbjct 823 ACTTATTTTCAACATCGTCTCGAGCATTGCCTCCCTTAGTGCTCAGTTTTCGCTGCATCA 882
Query 892 AACTGCAATGAGCATTCTTCAAAATTATTCTGTACTGTCTGTAGAATTAGGTTGTTACAA 951
| ||||||| |||||||||||| | ||| |||||||||||||||||||||||| || ||
Sbjct 883 ACCTGCAATTAGCATTCTTCAAGAG-ATTTTGTACTGTCTGTAGAATTAGGTTGGTA-AA 940
Query 952 TGTAAGAGCTTGGAAGAACTTCTCATGTCAGACATGT 988
|||||||||||||||||||| |||||||||||||||
Sbjct 941 TGTAAGAGCTTGGAAGAACTAGTCATGTCAGACATGT 977
> Ahg491288 jgi|Araly1|491288|fgenesh2_kg.7__721__AT4G33905.1
Length=1051
Score = 501 bits (271), Expect = 4e-141
Identities = 436/515 (85%), Gaps = 14/515 (3%)
Strand=Plus/Plus
Query 291 TGGTATCTT-GGTATGGTTAAATCACACCCAGTTGTGACCAAAAGTGTCACTTCCTCTCT 349
|||||| || || ||||| ||||| | || ||| |||||||| ||||| ||||| ||
Sbjct 267 TGGTAT-TTGGGAATGGTGAAATCGCGGCCGGTTCTGACCAAATCCGTCACGTCCTCGCT 325
Query 350 TATTTACATTGCCGCCGACTTGTCTTCTCAGACGATTGCGA-AAACTTCTTCT-GAGTCT 407
||||||||| ||||||||||||||||| ||||| ||| | | || |||| | ||||||
Sbjct 326 TATTTACATAGCCGCCGACTTGTCTTCGCAGACAATT-CCACAAGCTTC-AGTGGAGTCT 383
Query 408 TATGACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCAACA 467
||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||| |||
Sbjct 384 TATGACTTGGTAAGAACAGCAAGGATGGCAGGATATGGGTTATTAATCTTGGGTCCTACA 443
Query 468 CTTCACTACTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACAACG 527
|||||||| ||||||||| |||||||||||||||| || |||| ||||||||||||||||
Sbjct 444 CTTCACTATTGGTTCAATCTCATGTCAAGACTCTTCCCAAAACGAGATTTGATCACAACG 503
Query 528 TTTAAGAAAATGGCTATGGGACAGAC-GATCTACGGGCCTATTATGACTGTTATTTTCTT 586
|||||||||||||| ||||||||||| | ||||||||||| |||| |||| |||||||
Sbjct 504 TTTAAGAAAATGGCCATGGGACAGACCG-TCTACGGGCCTGCCATGAATGTTGTTTTCTT 562
Query 587 CTCATTGAATGCATCCCTACAAGGG-GAACGCGGTTCAGTTATACTTGCCAGATTGAAAA 645
|||| |||||||| || |||| ||| ||| |||||||| ||| |||| ||||||||||
Sbjct 563 CTCACTGAATGCAGCCTTACA-GGGTGAAAACGGTTCAGAGATAGTTGCTAGATTGAAAA 621
Query 646 GGGACTTACTCCCCGCGCT-CTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTTATC 704
||||| |||| ||| | | || || |||||||||||||||||| | |||||||||||
Sbjct 622 GGGACCTACTTCCCACAATGCTA-AATGGTGTCATGTATTGGCCTTTGTGTGATTTTATT 680
Query 705 ACATTCA-GATTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCATTTTCGTATGT 763
||||||| | |||||||| |||||||||||||| ||||| |||||||| ||||| ||| |
Sbjct 681 ACATTCAAG-TTCTTCCCAGTTCATTTACAGCCACTTGTGAGCAACTCGTTTTCATATTT 739
Query 764 ATGGACTATCTACATGACTTACATGGCAAACCGTG 798
|||||| |||||||| ||||| ||||||| |||||
Sbjct 740 ATGGACAATCTACATAACTTATATGGCAAGCCGTG 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5