BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14870.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931224 jgi|Araly1|931224|scaffold_303681.1 363 5e-100
> Ahg931224 jgi|Araly1|931224|scaffold_303681.1
Length=427
Score = 363 bits (196), Expect = 5e-100
Identities = 274/311 (88%), Gaps = 8/311 (3%)
Strand=Plus/Plus
Query 1 ATGCCTCCTCGCACGGGAAAGGATA-AACAAAACCCCAGGCTCCCACCGGAGGTGACTCG 59
|||||||||||||||| ||| || | || |||||||||||||||||||||||||||||||
Sbjct 30 ATGCCTCCTCGCACGGCAAAAGACAGAA-AAAACCCCAGGCTCCCACCGGAGGTGACTCG 88
Query 60 CCTACTCTACATTTGTAACCTTCCCTTTAGCATAACAAGCGAAGATACGTACGATCT-TT 118
|||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 89 CCTACTCTACGTTCGTAACCTTCCCTTTAGCATAACGAGCGAAGATATGTACGATCTCTT 148
Query 119 TCGGAAGGTACAGTACGATTCGTCAGGTTCGAATCGGTTGTGAAAAGGGCACAAAAGGTA 178
| ||||||||| | |||| || ||| |||||||||||||||| ||| ||| ||||| |
Sbjct 149 T-GGAAGGTACGGCGCGATCCGCCAGATTCGAATCGGTTGTGACAAGAACACGAAAGGCA 207
Query 179 C-GGCTTTCGTCGTATACGAGGATATCTACGATGCTAAGAAAGCTGTCGACCATCTCT-- 235
| || ||||||||||| ||||||||||||||| |||||| ||||||| |||||||| |
Sbjct 208 CTGG-TTTCGTCGTATTCGAGGATATCTACGAAGCTAAGGAAGCTGTTGACCATCTTTCC 266
Query 236 GGCTTCAACATAGCGAACCGGTACCTTATCGTGCACTATTACCAACATGCGAAGATGAGC 295
||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 267 GGCTTCAACATAGCGAATCGGTACCTTATTGTGCAGTATTATCAACACGCGAAGATGAGC 326
Query 296 AAGAAGTTTGA 306
|||||| ||||
Sbjct 327 AAGAAGCTTGA 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5