BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14880.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931226 jgi|Araly1|931226|scaffold_303683.1 684 0.0
> Ahg931226 jgi|Araly1|931226|scaffold_303683.1
Length=470
Score = 684 bits (370), Expect = 0.0
Identities = 437/469 (93%), Gaps = 6/469 (1%)
Strand=Plus/Plus
Query 82 ACAAAGCACACCGAAAATGGCGGTTTCTTCTGGAACATTCTCCACTTTCCTCTGCATCAA 141
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 7 ACAAAG--CACCGAAAATGGCGGTTTCTTCTGGAACATTCTCCACCTTCCTCTGCATCAA 64
Query 142 AACGACATCTTTCCGCAACCCATCAACTCCT-CTGTCCTCTCTCCGGTTCGCCTCTCACC 200
|||||||||||||| || ||||||||||||| || | ||||||||| | ||||||||||
Sbjct 65 AACGACATCTTTCCACAGCCCATCAACTCCTCCT-ACGTCTCTCCGGCTAGCCTCTCACC 123
Query 201 CGGCGGCTAAACTACGCTTGGTTCGAGCGGTAACATCTGCGACGGAATCTTCAGAGCCAA 260
|||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||
Sbjct 124 CGGCGGCTAAACTACGCTTGGTCCGAGCGGTGACATCTGCGACGGCCTCTTCCGAGCCAA 183
Query 261 CCGCAACCAATAAGAGAGTGCCACGCGGTATCATGAAACCTAGACCAGTTTCACCAGAGA 320
||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||||
Sbjct 184 CCGCAACCAATAAGAGAGTGCCACGTGGCATCATGAAGCCTAGACCAGTGTCACCGGAGA 243
Query 321 TGCAAGACATCGTCGAACTTCCTGAAATCGCTCGCACACAAGCTCTTAAGCGTATTTGGG 380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 244 TGCAAGACATCGTCGAACTTCCTGAAATCGCACGCACACAAGCTCTTAAGCGTATTTGGG 303
Query 381 CTTACATCAAAGAACATGACCTTCAGGACCCACAAAACAAGAGAGAAATACTGTGTGATG 440
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 304 CTTACATTAAAGAACATGAGCTTCAAGACCCACAAAACAAGAGAGAAATACTGTGTGATG 363
Query 441 AGAAGCTGAAGAAGATATTCGAAGGAAGAGATCGGGTTGGGTTCCTAGAGATTGCAAAGC 500
||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||
Sbjct 364 AGAAGCTGAAGAAGATATTCGAAGGCAGAGATCGGGTAGGGTTCTTGGAGATTGCAAAGC 423
Query 501 TCATCGGTCCTCACTTCCTCTGATGGATTGTTTCCGCGGAACTTTATTT 549
||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 424 TCATCGGTCCTCACTTCCTCTGATGGAAT-TT-CCGCGGAACTTTATTT 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5