BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14890.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480375 jgi|Araly1|480375|fgenesh2_kg.3__3076__AT2G14890.1 1195 0.0
> Ahg480375 jgi|Araly1|480375|fgenesh2_kg.3__3076__AT2G14890.1
Length=816
Score = 1195 bits (647), Expect = 0.0
Identities = 780/840 (93%), Gaps = 26/840 (3%)
Strand=Plus/Plus
Query 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAGaaaaagcaaaagcaaaaaT 60
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAG--AAA--AAAAGCAAAAAT 56
Query 61 GGCTCGATCTTTCGCTATTGCTGTGATCTGTATCGTCCTCATCGCCGGCGTTACTGGTCA 120
|||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 57 GGCTCGATCTTTCGCTATCGCTGTGATCTGTATCGTTCTCGTCGCCGGCGTTACTGGTCA 116
Query 121 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAACTCCTCCACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAACTCCTCCACC 176
Query 181 AGCAGCAACTCCTCCTCCTGTCTCAGCACCACCACCAGTCACAACATctcctcctccagt 240
|||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 177 AGCAGCTACTCCTCCTCCAGTCTCAGCACCACCTCCAGTCACAACCTCTCCTCCTCCGGT 236
Query 241 caccactgctcctcctccagcaaatccaccaccaccagtctcttctcctcctcctgcttc 300
|||||| | ||||||||||||| ||||| ||||||| ||| |||||||||||||||||
Sbjct 237 CACCAC--C-GCTCCTCCAGCAAACCCACCGCCACCAGCCTCATCTCCTCCTCCTGCTTC 293
Query 301 tcctccaccagctactcctcctccagtcgcttctcctcctcctcccgttgcttctcctcc 360
||||||||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 294 TCCTCCACCAGCTACTCCTCCTCCAGTCGCTTCTCCTCCTCCTCCCG-T-C-GCT--T-- 346
Query 361 accagcaactcctcctcccgtcgctactcctcccccagctcctctagcttcccctcctGC 420
|||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 347 --------CTCCTCCTCCCGTCGCAACTCCTCCACCAGCTCCTCTAGCTTCACCTCCAGC 398
Query 421 TCAAGTTCCAGCTCCAGCACCGACCACGAAGCCAGATTCTCCATCTCCATCTCCGTCATC 480
||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 399 TCAAGTTCCGGCTCCAGCACCGACCAAGAAGCCAGATTCTCCATCTCCATCGCCGTCTTC 458
Query 481 TAGCCCACCTCTTCCATCAAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 540
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TAGCCCACCTATTCCATCGAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 518
Query 541 TCCTAGCCCCACTGATGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 600
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCCTAGCCCCACCGGTGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 578
Query 601 ATTTGGATCTGTTCTC-GTCTGGTTTATGATCTAAGTGGAATCTTTTGTGA-CTGTGTTA 658
| |||||||||||||| || |||||||||||||||||| |||||||| | | ||||||
Sbjct 579 ACTTGGATCTGTTCTCGGT-TGGTTTATGATCTAAGTGTCGTCTTTTGT-ACCGGTGTTA 636
Query 659 CTTGCATTTATTTTTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CTTGCATTTATTATTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 696
Query 719 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 756
Query 779 ATATTTTGATTGCAGATACTTTTGTGGCTTCATTTCTCATTCCATTTGATTATTAGTGTA 838
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 757 ATATTTTGTTTGCAGATACTTTTGTGGCTTCCTTTCTCATTCCATTTGATTATTAGTGTA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5