BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G14900.1

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343104 jgi|Araly1|343104|fgenesh1_pg.C_scaffold_3002867           488    2e-137


> Ahg343104 jgi|Araly1|343104|fgenesh1_pg.C_scaffold_3002867
Length=327

 Score =  488 bits (264),  Expect = 2e-137
 Identities = 307/328 (94%), Gaps = 2/328 (1%)
 Strand=Plus/Plus

Query  36   ATGAAAATAATAGTCTCCATCTTAGTGT-TAGCCTCTCTTCTTCTAATCAGTTCATCTCT  94
            |||||||||||| |||||||||| || | |||||||  |||||||||||| |||||||||
Sbjct  1    ATGAAAATAATAATCTCCATCTT-GTTTCTAGCCTCAGTTCTTCTAATCACTTCATCTCT  59

Query  95   TGCTTCGGCTACTATATCAGATGCTTTTGGTAGTGGCGCGGTAGCTCCGGCACCGCAGAG  154
            |||||| |||||| | ||||||||| ||||||||||||||||||||||||| ||| ||| 
Sbjct  60   TGCTTCCGCTACTGTCTCAGATGCTATTGGTAGTGGCGCGGTAGCTCCGGCGCCGGAGAT  119

Query  155  CAAAGATGGACCGGCGTTAGAGAAATGGTGTGGACAGAAATGTGAAGGGAGATGCAAAGA  214
            |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  120  CAAATATGGACCGGCGTTAGAGAAATGGTGTGGACAGAAGTGTGAAGGGAGATGCAAAGC  179

Query  215  AGCGGGGATGAAAGATCGGTGTTTGAAGTATTGTGGGATATGTTGCAAAGACTGTCAGTG  274
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  180  AGCGGGGATGAAAGATCGGTGTTTGAAGTATTGTGTGATATGTTGCAAAGACTGTCAGTG  239

Query  275  TGTTCCTTCAGGCACTTATGGGAATAAGCATGAATGTGCTTGCTATCGTGACAAGCTCAG  334
            |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  240  TGTTCCTTCAGGCACTTATGGGAACAAGCATGAATGTGCTTGCTACCGTGACAAGCTCAG  299

Query  335  TAGCAAAGGCACTCCTAAATGTCCTTGA  362
            ||||||||||||||| ||||||||||||
Sbjct  300  TAGCAAAGGCACTCCCAAATGTCCTTGA  327



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23788700208


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5