BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14910.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480378 jgi|Araly1|480378|fgenesh2_kg.3__3079__AT2G14910.1 2316 0.0
> Ahg480378 jgi|Araly1|480378|fgenesh2_kg.3__3079__AT2G14910.1
Length=1542
Score = 2316 bits (1254), Expect = 0.0
Identities = 1440/1528 (94%), Gaps = 19/1528 (1%)
Strand=Plus/Plus
Query 55 tagggtttgtttgagactaagaggaagagaaagaagaagaagagaaaaTTCGTACAATTC 114
||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 31 TAGGGTTTGTTTGTCACTAAGAGGAAGAGAAAGAAGAAGAAGA-AAATTTCGTACAATTC 89
Query 115 CGCCATTAAAGCTT-CAACCTTTAATGGCGACAACGActctttcttccttctctctttct 173
|||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 90 CGCCATTAAAGCTTCCAA-CTTTAATGGCGACAACGACAATTTCTTCCTTCTCTCTTTCT 148
Query 174 cttcctcaacttctccataaacccacaaagcctcttcctttcctcttccttcttcCTCGA 233
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTTCCTCAACTTCTCCGTAAACCCACAAAGCCTCTTCCTTTCCTCTTCCTTCTTCCTCGA 208
Query 234 TTCAATCGGAGATTTCGAAGTCTCACTATCACTTCTTCTTCTACAACTTCTTCAAACAAT 293
||||||| ||||||||||||||||||||||||||||| | | ||| | |||
Sbjct 209 CTCAATCGAAGATTTCGAAGTCTCACTATCACTTCTTC-T-T-CAA-----GC-AAC--- 256
Query 294 TTCAGTAGTAATTGTGGCGATGATGGCTTCTCTCTTGACGATTTCACTCTCCATTCTGAT 353
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 257 TTCAGTAGTAATTGTGGCGATGATGGCTTCTCTCTCGACGATTTCACTCTTCATTCTGAT 316
Query 354 TCTCGATCACCTAAAAAATGTGTCCTTTCTGATCTTATACAAGAGATTGAGCCATTAGAT 413
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 317 TCTCGATCACCTAAAAAATGTGTCCTTTCTGATCTTATTCAAGAGATTGAACCATTAGAT 376
Query 414 GTGAGTTTGATTCAGAAGGATGTTCCAGTTACTACTTTGGATGCAATGAAAAGAACAATC 473
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 377 GTGAGTTTGATTCAGAAGGATGTTCCAGTGACTACTTTGGATGCTATGAAAAGAACAATC 436
Query 474 TCAGGCATGTT-GGGTCTTCTTCCATCTGATAGGTTTCAGGTTCATATTGAGTCACTTTG 532
|| || ||||| ||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 437 TCGGGGATGTTAGGG-CTTCTTCCATCTGATAGGTTTCAGGTTCATATTGAATCTCTTTG 495
Query 533 GGAACCTTTGTCTAAGCTTTTGGTATCTTCAATGATGACTGGGTATACATTGAGGAATGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GGAACCTTTGTCTAAGCTTTTGGTATCTTCAATGATGACTGGGTATACATTGAGGAATGC 555
Query 593 TGAATATCGGCTTTTTCTTGaaaaaaaCCTTGATATGAGTGGTGGAGG-CTTGGACAGCC 651
||||||||||||||||||||||||||| |||||||||||||| ||| | |||||| ||||
Sbjct 556 TGAATATCGGCTTTTTCTTGAAAAAAATCTTGATATGAGTGG-GGAAGACTTGGAAAGCC 614
Query 652 ACGCTTCGGAAAACACTGAATATGATATGGAAGGGACGTTTCCTGATGAAGATCATGTTT 711
| |||||||||| |||||||| ||| ||||||||| ||| ||||||||||| ||||||
Sbjct 615 GCACTTCGGAAAATACTGAATACGATTTGGAAGGGATGTTGACTGATGAAGATAATGTTT 674
Query 712 CATCCAAAAGGGATAGCAGAACTCAGAACCTTTCTGAAACGATTGATGAAGAAGGTTTGG 771
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 675 CATCCAAAAGGGATAGCATAACTCAGAGCCTTTCTGAAACGATTGATGAAGAAGGTTTGG 734
Query 772 GCAGAGTATCCTCTGAAGCTCAAGAATATATCTTACGTTTGCAGTCACAATTGTCTTCTG 831
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 735 GCAGAGTATCCTCTGAAGCTCAAGAATATATCTTTCGTTTGCAGTCACAATTGGCTTCTG 794
Query 832 TGAAAAAGGAATTACAAGAAATGAGACGAAAGAACGCTGCCCTACAAATGCAACAATTTG 891
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 795 TGAAAAAGGAATTACAAGAAATGAGGCGAAAGAACGCTGCCCTACAAATGCAACAATTTG 854
Query 892 TTGGCGAAGAGAAGAATGATTTGTTGGACTATTTACGATCTTTGCAACCTGAGAAGGTAG 951
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 855 TTGGCGAAGAGAAGAATGATTTGTTGGACTATTTAAGATCTTTGCAACCTGAGAAGGTAG 914
Query 952 CTGAGTTGTCAGAACCTGCGGCTCCTGAGGTGAAAGAGACTATTCATTCTGTTGTTCACG 1011
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 915 CTGAGTTGTCGGAACCTGCGGCTCCTGAGGTTAAAGAGACAATTCATTCTGTTGTTCACG 974
Query 1012 GTCTTTTGGCAACTCTATCACCGAAGATGCACTCTAAGTTTCCAGCATCAGAAGTTCCAC 1071
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 975 GTCTTTTGGCAACTCTATCACCGAAGATGCACTCCAAGTTTCCAGCATCAGAAGTGCCAC 1034
Query 1072 CTACTGAAACGGTGAAAGCAAAAAGTGATGAAGATTGTGCTGAACTTGTAGAGAACACTT 1131
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1035 CTACTGAAACGGTGAAAGCAAACAGTGATGAAGATTGTGCTGAACTTGTAGAGAACACCT 1094
Query 1132 CGTTGCAGTTTCAGCCTCTTATCTCACTGACTCGAGACTACCTTGCTCGTCTTCTCTTCT 1191
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CATTGCAGTTTCAGCCTCTTATCTCACTGACTCGAGACTACCTTGCTCGTCTTCTCTTCT 1154
Query 1192 GGTGCATGCTATTGGGACATTATCTCAGAGGTTTGGAATATCGAATGGAACTGATGGAGG 1251
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1155 GGTCCATGCTATTGGGACATTACCTCAGAGGTTTGGAATATCGAATGGAACTGATGGAGG 1214
Query 1252 TCCTGTCTTTGACATGCGATGCCAATGGGTCTGAGAACGTCGCTTGAAGCTATCTTTATA 1311
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1215 TCCTGTCTTTGACGTGTGATGCCAATGGGTCTGAGAACGTTGCTTGAAGCTATCTTTACA 1274
Query 1312 CATCTCAACATTGTCTTACATGCGTATCAGCGGCCTTGACACTCTTAAACCAACAAAGTG 1371
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1275 TATCTCAACGTTGTCTTACATGCGTATCACCGGCCTTGACATTCTTAAACCAACAAAGTG 1334
Query 1372 GGCAAGTGACTAGGAGACAGGCCAGCCTTTGAGCTTTAGCTCTTGCACATATATGCAGCT 1431
||||||||||| |||| |||||||| ||||||||||||||| |||| ||| ||||| ||
Sbjct 1335 AGCAAGTGACTAAGAGAAAGGCCAGCTTTTGAGCTTTAGCTCCTGCAGATACATGCAACT 1394
Query 1432 TTGTGCTGGCCTGAAAATTCATGGGCGAGGTAAAGTGTAACATAAGAAATCACTTCTACT 1491
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1395 TGGTGCTGGCCTGAAAATTCATGTGCGAGGTAAAGTGTAACATAAGAAATCACTTCTGCT 1454
Query 1492 AAAATTATTTTTCGTTGCATTATCGTGTGATGGATCTGCAAAGCAATAAAGCTAAGTGTA 1551
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1455 AAAATTATTTTCCGTTGCATTATCGTGTGATGGACCTGCAAAGCAATAAAGCTAAGTGTA 1514
Query 1552 ATTGTATTCAGGAATATACTCGTTTGGT 1579
||||||||||||||||||||| ||||||
Sbjct 1515 ATTGTATTCAGGAATATACTCATTTGGT 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5