BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G14935.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319035 jgi|Araly1|319035|fgenesh1_pm.C_scaffold_3002051           307    2e-83


> Ahg319035 jgi|Araly1|319035|fgenesh1_pm.C_scaffold_3002051
Length=228

 Score =  307 bits (166),  Expect = 2e-83
 Identities = 210/230 (91%), Gaps = 7/230 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGAACTCTTCT---ATTATATTGGTACTAGTTTTCTTTTTCTTCATTTCTTCTTCA  57
            |||||||||||||||   ||| |||| ||||||||| |||||||||||||||||||||||
Sbjct  1    ATGAAGAACTCTTCTACAATTTTATTCGTACTAGTTGTCTTTTTCTTCATTTCTTCTTCA  60

Query  58   GGAG-AAGCAAAAACGTGTTCTGATGGATGGACTTGTGTAGGAGAAGACAAATGCAAAGT  116
            |||| ||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct  61   GGAGAAAG-AAAAAAGTGTTTTGATGGATGGACTTGTTTAGGAGAAGACAAATGCAAAGT  119

Query  117  AAACTGCATGGCTAAACACAAAGGAGTTGGAACATGTA-CTTTGTATATTATTCCTTCTT  175
            ||| ||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||
Sbjct  120  AAAGTGCATGGCTAAACACAAAGGAGTTGGAACCTGTAACTT-GTATACTATTCCTTCTT  178

Query  176  TCCCTGCTCCGATAACTTCTTATATTTGCGATTGCATGTTTGATTGCTAA  225
            |||||||||||  | ||||||||||||||||||||| |||||||||||||
Sbjct  179  TCCCTGCTCCGGGAGCTTCTTATATTTGCGATTGCAAGTTTGATTGCTAA  228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5