BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14960.1
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480379 jgi|Araly1|480379|fgenesh2_kg.3__3080__AT2G14960.1 2939 0.0
> Ahg480379 jgi|Araly1|480379|fgenesh2_kg.3__3080__AT2G14960.1
Length=1960
Score = 2939 bits (1591), Expect = 0.0
Identities = 1842/1963 (94%), Gaps = 17/1963 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTAGACTCCAACCTCTCTTCGCCCTTGGGACCTCCGGCGTGTGAGAAGGACGCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGGCGGTAGACTCCAACCTCTCTTCGCCCTTGGGACCTCCGGCGTGTGAAAAGGATGCA 60
Query 61 AAAGCCCTTCGTTTCATCGAGGAAATGACCCGAAACGCCGACACCGTTCAAGAAAACCTT 120
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAAGCCCTCCGTTTCATAGAGGAAATGACCCGAAACGCAGACACCGTTCAAGAAAACCTG 120
Query 121 TTGGCGGAGATTCTCGCTCGCAACGCTGACACCGAGTACCTCCGCCGCTTCAACCTATGC 180
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 121 CTAGCGGAGATTCTGGCTCGCAACGCCAACACCGAGTACCTCCGCCGCTTCAACCTCGGC 180
Query 181 GGCGCCACCGACCGTGATACCTTTAAAACGAAGATTCCAGTCATTACATACGAAGATCTC 240
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 181 GGCGCCACCGACCGTGATACCTTTAAAACCAAGATTCCAGTCATTACCTACGAAGATCTT 240
Query 241 CAGCCAGAGATTCAACGCATTGCTGATGGAGACCGCTCTCCCATCTTATCTGCCCATCCC 300
||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||
Sbjct 241 CAGCCAGAGATCCAACGCATCGCTGATGGAGACCGCTCTCCGATCTTATCTTCCCATCCT 300
Query 301 ATCTCTGAGTTCCTCACTAGCTCTGGAACATCAGCCGGAGAGAGGAAACTTATGCCGACC 360
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 301 ATCTCGGAGTTCCTCACTAGCTCGGGAACCTCAGCGGGAGAGAGGAAACTTATGCCGACC 360
Query 361 ATTAAAGAAGAGCTCGATCGTCGCCAGCTTCTTTACAGTCTCCTCATGCCCGTAATGAAT 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTAGAGAAGAGCTCGATCGTCGCCAGCTTCTTTACAGTCTCCTCATGCCCGTAATGAAT 420
Query 421 TTGTATGTGCCGGGTCTAGATAAAGGAAAGGGAATGTACTTTTTGTTCGTTAAGTCCGAA 480
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 421 TTGTATGTGCCGGGTCTAGATAAAGGAAAAGGAATGTACTTCTTGTTCGTTAAGTCAGAA 480
Query 481 ACAAAGACACCGGGTGGGCTACCAGCTCGACCGGTTTTGACCAGTTATTACAAGAGTGAA 540
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 481 TCAAAGACACCGGGTGGGCTACCGGCTCGACCGGTTTTGACCAGTTACTACAAAAGTGAA 540
Query 541 CACTTTCGGTCACGGCCGTACGACCCCTACAACGTCTACACAAGTCCCAACGAAGCCATT 600
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 CACTTTCGGTCTCGGCCATACGATCCCTACAACGTCTACACAAGTCCCAACGAAGCCATT 600
Query 601 CTCTGTCCCGATTCATTTCAAAGTATGTACACTCAGATGCTATGCGGCCTCCTTGACCGC 660
|||||||| || ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 601 CTCTGTCCGGACTCATTTCAAAGTATGTACACTCAGATGCTTTGTGGCCTCCTTGACCGC 660
Query 661 CTTTCTGTCCTCCGAGTGGGCGCCGTCTTTGCCTCTGGTCTCCTCCGTGCCATCCGCTTC 720
|| ||||||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 661 CTCTCTGTCCTCCGCGTGGGCGCTGTCTTTGCCTCCGGTCTTCTCCGTGCCATTCGCTTC 720
Query 721 CTCCAGCTCCATTGGTCTCGCTTCGCCCATGACATCGAGTTAGGATGTCTTGACTCCGAG 780
|||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||
Sbjct 721 CTCCAGCTCCATTGGTCTCGCTTCGCTAACGACATTGAGTTAGGATGTCTGGACTCCGAG 780
Query 781 ATAACTGACCCGTCTATAAGACAATGCATGTCCGGTATTCTCAAACCAGATCCTGTCCTG 840
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 781 ATAACTGACCCGTCTATAAGACAATGTATGTCCGGTATTCTCAAACCGGACCCTGTCCTG 840
Query 841 GCAGAGTTCATCCGCCGGGAGTGCAAGTCGGACAATTGGGAAAAAATCATTACCCGAATT 900
||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 841 GCAGAGTTCATCCGCCGGGAGTGCAAGTCCGACAATTGGGAACGAATCATCACCCGAATT 900
Query 901 TGGCCAAACACTAAGTACCTTGACGTCATCGTAACTGGAGCCATGGCTCAGTATATCCCA 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGCCCAACACTAAGTACCTTGACGTCATCGTAACTGGAGCCATGGCTCAGTATATCCCA 960
Query 961 ACGTTGGAATACTATAGTGGTGGTCTTCCGATGGCTTGCACCATGTACGCCTCCTCCGAG 1020
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 ACGTTGGAATACTATAGCGGTGGTCTTCCGATGGCTTGCACCATGTACGCCTCCTCGGAG 1020
Query 1021 TGTTACTTTGGTTTGAACCTTAACCCAATGAGCAAACCATCAGAAGTCTCTTACACCATC 1080
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1021 TGTTACTTTGGTTTAAACCTTAACCCAATGAGTAAACCCTCAGAAGTCTCTTACACCATC 1080
Query 1081 ATGCCCAACATGGCCTACTTCGAGTTCATCCCTCTCGGTGGCACCAAGGCCGTTGAACTC 1140
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1081 ATGCCCAACATGGCCTACTTCGAGTTCATCCCTCTCGGCGGCACCAAGGCCGTTGAACTA 1140
Query 1141 GTTGATGTAAATATCGGTAAAGAGTATGAACTCGTTGTCACGACCTATGCTGGTCTCTGT 1200
||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1141 GTTGATGTAAAGATCAGTAAAGAGTATGAACTCGTTGTCACCACCTATGCCGGTCTTTGT 1200
Query 1201 CGATACCGAGTTGGTGACATCCTTCGAGTCACAGGTTTCCATAACTCCGCACCTCAGTTC 1260
||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1201 CGATACCGAGTCGGTGACATCCTCCGAGTCACAGGCTTCCATAACTCCGCACCTCAGTTT 1260
Query 1261 CACTTCGTGAGGAGGAAGAACGTCCTCCTCAGCATCGACTCTGACAAGACCGACGAGTCA 1320
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1261 CACTTCGTGAGGAGGAAAAACGTCCTCCTCAGCATCGACTCCGACAAGACCGACGAGTCA 1320
Query 1321 GAGCTTCAAAAGGCGGTGGAGAATGCATC-AAGTATTCTTCATGAAGAGTGTGGGAGCCG 1379
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1321 GAGCTTCAAAAGGCGGTGGAGAATGCATCGAAG-ATTCTTCATGAAGAGTGTGGGAGCCG 1379
Query 1380 CGTAGCCGAGTACACTAGCTACGCAGACACAAGCACGATCCCGGGCCACTATGTCTTATA 1439
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 TGTAGCCGAGTACACTAGCTACGCAGACACAAGCACGATCCCGGGCCACTACGTCTTATA 1439
Query 1440 CTGGGAGTTGTTAGTGAGGGATGGGGCGAGGCAGCCAAGTCATGAGACTC-TGACTCGTT 1498
|||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||
Sbjct 1440 CTGGGAGTTGTTAGTGAGGGATGGAGCGAGGCAGCCAAGTCATGAGAC-CATAACTCGTT 1498
Query 1499 GCTGCCTTGGGATGGAAGAGTCATTAAACTCGGTTTACCGGCAAAGCCGAGTCGCGGACA 1558
||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1499 GCTGCCTCGAGATGGAAGAGTCATTAAACTCGGTTTACCGACAAAGCCGAGTCGCGGACA 1558
Query 1559 ACTCGGTTGGACCATTGGAGATTAGAGTGGTGAGAAACGGAACGTTCGAGGAGCTGATGG 1618
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1559 ACTCGGTTGGACCTTTGGAGATTAGAGTGGTGAGAAACGGAACGTTCGAGGAACTGATGG 1618
Query 1619 ATTACGCAATCTCAAGAGGTGCATCAATTAACCAGTACAAGGTACCAAGGTGCGTGAACT 1678
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATTACGCAATCTCAAGAGGCGCATCAATTAACCAGTACAAGGTACCAAGGTGCGTGAACT 1678
Query 1679 TTACACCTATCGTGGAGTTACTAGATTCTAGGGTTGTGTCGGCGCATTTTAGCCCATCCT 1738
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCACACCTATTGTGGAGTTACTAGATTCTAGGGTTGTGTCGGCGCATTTTAGCCCATCCT 1738
Query 1739 TACCGCATTGGACGCCGGAGAGAAGGAGAAGATAAGGACAGGCCCATGTTTTTT-CCTTG 1797
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1739 TACCGCATTGGACGCCGGAGAGGAGGAGAAGATAAGGACAGGCCCATGTTTTTTTCCTTG 1798
Query 1798 GAGTTCTCGTGAAGTCAAAGGCTTTAAAATTAATTAGCGGTTTGGTCTTGTAATATAATT 1857
|||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||
Sbjct 1799 GAGTTCTCGTGAAGTCAAAGGCTTTACA-TTAATCAGCGATTTGGTCTTGTAATATAATT 1857
Query 1858 AGATTCCTTGCTGGTGctttagtttttcttctcgctttta------a-tgt-gtcttttt 1909
||||| || |||||| ||||||||||||| || |||| | ||| || |||||
Sbjct 1858 AGATTACTCGCTGGTAATTTAGTTTTTCTTGTCTTTTTTTTTTCTTAGTGTTGTTTTTTT 1917
Query 1910 -actcgttttttttCA--CTGTGGGATCTCTGTGTGTAATTTG 1949
||||||||||||| | |||||| ||||||||||||||||||
Sbjct 1918 TACTCGTTTTTTTTAAAACTGTGGAATCTCTGTGTGTAATTTG 1960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77475558330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5