BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15000.4
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480380 jgi|Araly1|480380|fgenesh2_kg.3__3081__AT2G15000.4 876 0.0
> Ahg480380 jgi|Araly1|480380|fgenesh2_kg.3__3081__AT2G15000.4
Length=638
Score = 876 bits (474), Expect = 0.0
Identities = 559/600 (93%), Gaps = 6/600 (1%)
Strand=Plus/Plus
Query 72 ctctctctctctcAATTCACTTCTCCTCCTTCAATGGCTTGGCGCAACGCAGGATCTGCC 131
||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 45 CTCGCTCTCTCTCAATTCAC--GT-CTCCTTCAATGGCTTGGCGCAACGCAGGATCTGCT 101
Query 132 GCTCGTTCTTTCGTCTCCGCCACCGCAAGATCACCATCTCTCCGTTCTCCCACCACGGCG 191
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 102 GCTCGTTCTTTCGTCTCCGCCACCGCTAGATCACCGTCTCTCCGTTCTCCGACGACGGCC 161
Query 192 CTTCCTCGCCTCCGTCCTCCTCAATCCTCCTTACCTAGCCGTCGCTTCACCTTCTCATCA 251
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 162 CTTCCTCGCCTCCGTCCTCCTCAATCCTCCTTACCTGGCCGTCGCTTCACCTTCTCATCA 221
Query 252 CCTTCCAGGAATCTAGGAGCACTTGGTTGCACACAGTCGTTCTTGCCTCTGTACAGTGTT 311
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CCTTCTAGGAATCTAGGAGCACTTGGTTGCACACAGTCGTTCTTGCCTCTGTACAGTGTT 281
Query 312 GTGGCTACTTCTCAACTCACATCTCACCTTAACGTTAACTTGCGAGCTTTCTGCGAGCTG 371
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 282 GTGGCTGCTTCTCAACTCACATCTCACCTTAACGTTAATTTGCGGGCTTTCTGCGAGCTG 341
Query 372 TCTAACGGTACCTTCCAACGCACTTGTCAAGATCGCTAGTAGTCCTCTTTGTACTTGAAG 431
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 342 TCTAACGGTACCTTCCAACGCACTTGTCCGGATCGCTAGTAGTCTTCTTTGTACTTGAAG 401
Query 432 AGGCAAAAGAGTGTAATTTCACTGCGCATGCGTGAATCAGTACTTTGAAGGGATGTGAGA 491
|||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 402 AGGCAAAAGAGTGTCTTTTCACCGTGCATGCGTGAATCAGTACTTTGAATGGATGTGAGA 461
Query 492 TCGAAATTGTGGGATTACCTCAGCAAAAACTTGCTTATTGTGTTGCCTTTTTTAGAAGTT 551
||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 462 TCGAAATTGTGGGGTTACCTCAGCAAAAACTTGTTTGTTGTGTTGC-TTTTTTAGAAGTT 520
Query 552 TTAGTTTCACAATGTGTGGATTTATTAGTTGTAGAGCTTTTCGTATGCTTGGCACAATGG 611
|||||| ||||||||||||||| ||||||| |||| |||||||| ||||||||||||||
Sbjct 521 TTAGTTCCACAATGTGTGGATT-ATTAGTTATAGATCTTTTCGTTTGCTTGGCACAATG- 578
Query 612 TTTTTTCTCAGAGAACCtttttttGTTTTGGAGAAATGCATAGCAGCATTAATAAGTGTA 671
|||||||||||||||| |||||||||| || ||||| ||| |||||||||||||||||
Sbjct 579 TTTTTTCTCAGAGAACAGTTTTTTGTTTCCGAAAAATGAATAACAGCATTAATAAGTGTA 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25961706477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5