BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15000.4 Length=706 Score E Sequences producing significant alignments: (Bits) Value Ahg480380 jgi|Araly1|480380|fgenesh2_kg.3__3081__AT2G15000.4 876 0.0 > Ahg480380 jgi|Araly1|480380|fgenesh2_kg.3__3081__AT2G15000.4 Length=638 Score = 876 bits (474), Expect = 0.0 Identities = 559/600 (93%), Gaps = 6/600 (1%) Strand=Plus/Plus Query 72 ctctctctctctcAATTCACTTCTCCTCCTTCAATGGCTTGGCGCAACGCAGGATCTGCC 131 ||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 45 CTCGCTCTCTCTCAATTCAC--GT-CTCCTTCAATGGCTTGGCGCAACGCAGGATCTGCT 101 Query 132 GCTCGTTCTTTCGTCTCCGCCACCGCAAGATCACCATCTCTCCGTTCTCCCACCACGGCG 191 |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| Sbjct 102 GCTCGTTCTTTCGTCTCCGCCACCGCTAGATCACCGTCTCTCCGTTCTCCGACGACGGCC 161 Query 192 CTTCCTCGCCTCCGTCCTCCTCAATCCTCCTTACCTAGCCGTCGCTTCACCTTCTCATCA 251 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 162 CTTCCTCGCCTCCGTCCTCCTCAATCCTCCTTACCTGGCCGTCGCTTCACCTTCTCATCA 221 Query 252 CCTTCCAGGAATCTAGGAGCACTTGGTTGCACACAGTCGTTCTTGCCTCTGTACAGTGTT 311 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 CCTTCTAGGAATCTAGGAGCACTTGGTTGCACACAGTCGTTCTTGCCTCTGTACAGTGTT 281 Query 312 GTGGCTACTTCTCAACTCACATCTCACCTTAACGTTAACTTGCGAGCTTTCTGCGAGCTG 371 |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 282 GTGGCTGCTTCTCAACTCACATCTCACCTTAACGTTAATTTGCGGGCTTTCTGCGAGCTG 341 Query 372 TCTAACGGTACCTTCCAACGCACTTGTCAAGATCGCTAGTAGTCCTCTTTGTACTTGAAG 431 |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 342 TCTAACGGTACCTTCCAACGCACTTGTCCGGATCGCTAGTAGTCTTCTTTGTACTTGAAG 401 Query 432 AGGCAAAAGAGTGTAATTTCACTGCGCATGCGTGAATCAGTACTTTGAAGGGATGTGAGA 491 |||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||| Sbjct 402 AGGCAAAAGAGTGTCTTTTCACCGTGCATGCGTGAATCAGTACTTTGAATGGATGTGAGA 461 Query 492 TCGAAATTGTGGGATTACCTCAGCAAAAACTTGCTTATTGTGTTGCCTTTTTTAGAAGTT 551 ||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct 462 TCGAAATTGTGGGGTTACCTCAGCAAAAACTTGTTTGTTGTGTTGC-TTTTTTAGAAGTT 520 Query 552 TTAGTTTCACAATGTGTGGATTTATTAGTTGTAGAGCTTTTCGTATGCTTGGCACAATGG 611 |||||| ||||||||||||||| ||||||| |||| |||||||| |||||||||||||| Sbjct 521 TTAGTTCCACAATGTGTGGATT-ATTAGTTATAGATCTTTTCGTTTGCTTGGCACAATG- 578 Query 612 TTTTTTCTCAGAGAACCtttttttGTTTTGGAGAAATGCATAGCAGCATTAATAAGTGTA 671 |||||||||||||||| |||||||||| || ||||| ||| ||||||||||||||||| Sbjct 579 TTTTTTCTCAGAGAACAGTTTTTTGTTTCCGAAAAATGAATAACAGCATTAATAAGTGTA 638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25961706477 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5