BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15020.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480385 jgi|Araly1|480385|fgenesh2_kg.3__3086__AT2G15020.1 2523 0.0
> Ahg480385 jgi|Araly1|480385|fgenesh2_kg.3__3086__AT2G15020.1
Length=1628
Score = 2523 bits (1366), Expect = 0.0
Identities = 1546/1634 (95%), Gaps = 7/1634 (0%)
Strand=Plus/Plus
Query 25 AAACACACATTTTCCTTAGAAAAATAAACCAAGTCCAAGAAAATGGACCCATGGTCATGG 84
||||||||||||||||| ||||| ||| || |||||||||||||||| |||||||||
Sbjct 1 AAACACACATTTTCCTT--AAAAA-AAA-TAA-ACCAAGAAAATGGACCCTTGGTCATGG 55
Query 85 ATATGTGAGCTTCCAGAAGATCCTGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 144
||||| || ||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 56 ATATGCGACCTTCCCGAAGCTCCCGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 115
Query 145 CTCGCTGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAACGGACTTTGGGTTCTGAC 204
||||| |||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 116 CTCGCAGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAAAGGGCTTCGGGTTCTGAC 175
Query 205 CAAGAATCTCACTCTCTCACCTTTACAGTTGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 264
| ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 176 CTAGAATCTCAGTCTCTCACCTTCAAAGTGGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 235
Query 265 TCGACCATTTGGGTCTCCAACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 324
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCGACCATTTGGGTCTCGGACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 295
Query 325 GTTCTCCAGCTTCTTCAAGAACTAATCACCCGTTCCCCTACCACACACGACGGCGCGTGC 384
||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 296 GTTCTCCAGCTTCTTCAAGAACTAATCACCCATTCCCCTACCTCACGCGACGGCGCGTGC 355
Query 385 ACAAAGTTTGAACAACTTGAAATCAAACCAAGTCCAGTTAGCTGGGTCATGGACTCTCAC 444
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 356 ACAAAGTTTGAACAACTTGAAATCAAACCAGGTCCGGTTAGCTGGGTCATGGACTCTCAC 415
Query 445 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACACGCCTCTTCTGGTTG 504
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 416 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACGCGCCTCTTCTGGTTG 475
Query 505 TGTGTGTTTGACGCGCCAAGCGAAGTAGGCTCTTTCTTCTTCCAACACT-TACTAGGTCC 563
||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 476 TGTGTATTTGACGCGCCTAGCGAAGTAGGCTCTTTCTTCTTCCAACA-TCTACTAGGTCC 534
Query 564 ACACGTGAACGCGCTTACATGTCAACATGCACCTGTCTTACGGACGTTTCTCGTCTCTCT 623
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 535 ACACGTGAACGCGCTTACATGTCAACACGCACCTGTGTTACGAACGTTTCTCGTCTCACT 594
Query 624 CGGTGTAGACGCCGAGCTTTGTATTGTACGAGCTGCTTCGTATGCCTTATCCAAATGGAT 683
||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 595 TGGTGTAGACGCCGAGCTGTGTATTGTACGAGCCGCTTCTTACGCCTTATCCAAATGGAT 654
Query 684 GATCTCTAAAGAGATAGGACTTGGGAATCTTGGTTTGAAACAGTTCAGTAGCAGCCTCAT 743
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 655 GATCTCTAAAGAGATAGGACTTGGGAATCTCGGGTTGAAACAGTTAAGTAGCAGCCTCAT 714
Query 744 GCCACGTCATTCGTTGGGGTTTTCGTATGCCACAGAAGCTCATGGTCTTTGGATCTTGAA 803
||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 GCCTCGTCATTCATTGGGATTTTCGTATGCCACAGAAGCTCATGGGCTTTGGATCTTGAA 774
Query 804 AGGTTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 863
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGGCTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 834
Query 864 CAAGATCGTCAAGTTTCCATTCGTAGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 923
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 835 CAAGATCATCAAGTTTCCATTCGTGGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 894
Query 924 GCATCAACAAGCTGAAATACTAGTACAGTTTGAATACTCCGTTAAGTTCTATGAGAACTA 983
|||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 895 GCATCAACAAGCGGAAATACTAGTACAGTTTGAATACTCCGTTAGGTTTTACGAGAACTA 954
Query 984 CATAAAAGTAAACGCACGTGTAGACAACATACGCATCCACGTCTCGAAGCTAGGGTTTCA 1043
||||||||| |||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 955 CATAAAAGTGAACGCACGTGTAGATAACATACGCATCCACGTATCAAAGTTAGGGTTTCA 1014
Query 1044 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCCGAGGAGAGGTACTT 1103
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1015 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCGGAGGAGAGGTACTT 1074
Query 1104 CCCATCACGGGTACGGGTCTGGCTCGGGCCAGAACTCGGGTCCAGCCACGTATCGGGGCT 1163
||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 1075 CCCGTCACGGGTACGGGTCTGGCTTGGGCCAGAAATCGGGTCGAGCCACGTATCGGGGCT 1134
Query 1164 AAGTCTAGGAAGGTCAACGAAGAACGAGGAGAGAGATATCGAGGTGACTAGAGTGCTAAA 1223
||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1135 AAGCCTAGGAAGGTCAACGAAGAACGAAGAGAGAGATATTGAGGTGACTAGGGTGCTAAA 1194
Query 1224 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCGAGAGTCAAGGCAAGAGCAAGAATGGCAAC 1283
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1195 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCAAGAGTCAAGGCAAGAGCAAGAATGTCAAC 1254
Query 1284 AAAGAGGAAGGTTAAAGATTGGAGAATAGAGCAGGAAAGCGAAGGAAACGCTGCCGTTTT 1343
|||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 1255 GAAGAGGAAGGTTAAAGATTGGAGAATCGAGCAGGAGAGTGAAGGAAACGCTGCTGTTTT 1314
Query 1344 TGATGCGGTGTTGTACGATAGAGAGAGCGGTCAAGAAGTGACAACCGTTAAGCCGAAGCC 1403
||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 1315 CGATGCAGTGTTGTACGATAGAGAGAGCGGCCAAGAAGTGACAACGGTTATGCCGAAGCC 1374
Query 1404 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGGGGGATGGTGTTTGGAAGGGA 1463
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1375 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGAGGGATGGTGTTTGGAAGGGA 1434
Query 1464 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1494
Query 1524 GTGGAGACTGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1583
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GTGGAGAATGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1554
Query 1584 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCGTTGCTTCCTACTTC 1643
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1555 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCTTTGCTTCCCACTTG 1614
Query 1644 TTAGAGTCGCAAAT 1657
||||||||||||||
Sbjct 1615 TTAGAGTCGCAAAT 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5