BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15025.1 Length=579 Score E Sequences producing significant alignments: (Bits) Value Ahg314745 jgi|Araly1|314745|fgenesh1_pm.C_scaffold_1003525 523 5e-148 Ahg356097 jgi|Araly1|356097|fgenesh1_pg.C_scaffold_7003270 521 2e-147 > Ahg314745 jgi|Araly1|314745|fgenesh1_pm.C_scaffold_1003525 Length=567 Score = 523 bits (283), Expect = 5e-148 Identities = 486/579 (84%), Gaps = 33/579 (6%) Strand=Plus/Plus Query 1 ATGATTTTCTCTCTACGTG-GAGATGATTACCGAAATTTCTTCAATCATTTTTCTCCATT 59 ||||| ||||||||| | | ||| |||||||||||| |||| ||||| ||||| || || Sbjct 1 ATGATCTTCTCTCTAAG-GAGAGCTGATTACCGAAACTTCTCCAATCCCTTTTCCCCGTT 59 Query 60 TCCGCTGAATACTGAATCTGAGCATGTGTTACCCAACGATTTTAAGGTTGATATTCATGA 119 ||| |||||||| |||||||| || |||||| |||||| ||||||||||||||||||||| Sbjct 60 TCCTCTGAATACAGAATCTGAACAAGTGTTATCCAACGTTTTTAAGGTTGATATTCATGA 119 Query 120 AATCAAAGGTTTGAGGAACTATGGAATTATGAGTCCTG-CTCCATGGAGCGGTGCTTACC 178 |||||||||||||||||||||||| ||||||| ||| | ||| ||||||||||| ||||| Sbjct 120 AATCAAAGGTTTGAGGAACTATGGCATTATGA-TCCCGTCTCTATGGAGCGGTGGTTACC 178 Query 179 -AAAGCTTCCTTAACTCCTTACCTTCAAACC-CGC-C--C-A-ACAA-CA-CTTTAACCT 229 ||| ||||| |||| ||| || || |||| | | | | | | || || | ||||||| Sbjct 179 TAAA-ATTCCTCAACT-CTTTCCCTCTAACCTCACTCGACGACAGAACCAGC-TTAACCT 235 Query 230 CTCTCCTTGTCGATGAGCAAACCCAGCTCG--C-TCTCGTGCCGGCGAGAACCTCGACTA 286 ||||| ||| |||||||||| ||| |||| | |||||| ||||||||||||||| ||| Sbjct 236 CTCTCTTTGCCGATGAGCAATTCCAACTCGCTCTTCTCGTACCGGCGAGAACCTCGGCTA 295 Query 287 TGGAA-TCGTTTTCAACGTCACTTAGTCTTTTGACCGTGGCCATTGTTTCGTCTAACGT- 344 ||||| || | |||||||||||||||||||||||||||| | ||||| || ||||||| Sbjct 296 TGGAACTC-TATTCAACGTCACTTAGTCTTTTGACCGTGACTATTGTATCATCTAACGCC 354 Query 345 TCCGTATGTAGATGACTTTTCGACAAACCGTGTTACCACTTGCACCAATTCGCTTTATAG 404 || || || ||||||| ||||||||||||||||| || ||||||||||| |||| |||| Sbjct 355 TC-GTCCGTGGATGACTCTTCGACAAACCGTGTTATCATTTGCACCAATTTGCTTCATAG 413 Query 405 CTTTGGCTTCCAAACTCTCATGGATCCTTTGTCGAACTATCTTTT-CT-TTCTTTATGTA 462 ||||||| ||||| ||||||||||||| |||||||||||| |||| || || ||| |||| Sbjct 414 CTTTGGCCTCCAAGCTCTCATGGATCCCTTGTCGAACTAT-TTTTGCTATT-TTTGTGTA 471 Query 463 GCATTTGCTTCAACCTTTGTCTGTTGTTGCTA-TTTCGCTTTAAGCCTTGT-TATCTTTG 520 |||||||||| ||||||||| ||||||||||| ||| | |||||||||| | |||| ||| Sbjct 472 GCATTTGCTTTAACCTTTGTTTGTTGTTGCTACTTT-GTTTTAAGCCTT-TCTATCCTTG 529 Query 521 TATCCTTAACTACTT-GTAACCTTGTTTTTATTGGATGA 558 || || | |||||| | |||||||||| |||||||||| Sbjct 530 TACCCCTGGCTACTTTG-AACCTTGTTTCTATTGGATGA 567 > Ahg356097 jgi|Araly1|356097|fgenesh1_pg.C_scaffold_7003270 Length=1392 Score = 521 bits (282), Expect = 2e-147 Identities = 476/565 (84%), Gaps = 31/565 (5%) Strand=Plus/Plus Query 1 ATGATTTTCTCTCTACGTG-GAGATGATTACCGAAATTTCTTCAATCATTTTTCTCCA-- 57 ||||| | ||||||| | | ||| ||||||||| || |||||||||| ||||| |||| Sbjct 826 ATGATCTCCTCTCTAAG-GAGAGGTGATTACCGGAACTTCTTCAATC-TTTTT-TCCATG 882 Query 58 TTTCCGCTGAATACTGAATCTGAGCATGTGTTACCCAACGATTTTAAGGTTGATATTCAT 117 ||||| |||||||| ||||| ||||| |||||| || | |||| |||||||||||||||| Sbjct 883 TTTCCTCTGAATACCGAATCCGAGCAAGTGTTATCCTATGATTATAAGGTTGATATTCAT 942 Query 118 GAAATCAAAGGTTTGAGGAACTATGGAATTATGAGTCCTGCT-CCATGGAGCGGTGCTTA 176 ||||||||||||| |||||||| ||| ||||||| ||| | | ||||||| ||||| ||| Sbjct 943 GAAATCAAAGGTTGGAGGAACTTTGGCATTATGA-TCCCGTTCCCATGGAACGGTGGTTA 1001 Query 177 CCAAAGCTTCCTTAACTCCTTACCTTCAAACCCGCCC-A--AC--AA-CACTTTAACCTC 230 |||||||||||| |||| |||||| | ||||||||| | || || || |||||| || Sbjct 1002 CCAAAGCTTCCTCAACTTTTTACCTCCGAACCCGCCCGACGACAGAACCAGTTTAACTTC 1061 Query 231 TCTCCTTGTC-GATGAGCAAACCCAGCTCGC--T-CTCGTGCCGGCGAGAACCTCGACTA 286 |||||||| | |||||||||| ||||||||| | ||||||||||||||||||||| ||| Sbjct 1062 TCTCCTTG-CTGATGAGCAAATCCAGCTCGCTATACTCGTGCCGGCGAGAACCTCGGCTA 1120 Query 287 TGGAATCGTTTTCAACGTCACTTAGTCTTTTGACCGTGGCCATTGTTTCGTCTAACG-TT 345 ||||| | | |||||||||||||||||| ||||||||| ||||||| |||||||||| || Sbjct 1121 TGGAACCCTATTCAACGTCACTTAGTCTATTGACCGTGACCATTGTATCGTCTAACGCTT 1180 Query 346 CCGTAT-GTAGATGACTT-TTCGACAAACCGTGTTACCACTTGCACCAATTCGCTTTATA 403 | || | || ||||| || ||||||||||||||||| |||||||||||||| |||| || Sbjct 1181 C-GT-TCGTGGATGA-TTCTTCGACAAACCGTGTTATCACTTGCACCAATTTGCTTCATT 1237 Query 404 GCTTTGGCTTCCAAACTCTCATGGATCCTTTGTCGAACTATCTTTT-CTTTCTTTATGTA 462 ||||||| ||||| |||||||||||||||| ||||| || ||||| || ||||| |||| Sbjct 1238 CCTTTGGCCTCCAAGCTCTCATGGATCCTTTATCGAATTA-CTTTTGCTATCTTTGTGTA 1296 Query 463 GCATTTGCTTCAACCTTTGTCTGTTGTTGCTATTTCGCTTTAAGCCTTGTTATCTTTGTA 522 |||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||| ||||| Sbjct 1297 GCATTTGCTTTAACCTTTGTTTGTTGTTGCTACTTCTTTTTAAGCCTTCTTATCCTTGTA 1356 Query 523 TCCTTAA-CTACTT-GTAACCTTGT 545 | || |||||| | |||||||| Sbjct 1357 -CATTTGGCTACTTTG-AACCTTGT 1379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21176351895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5