BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15025.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314745 jgi|Araly1|314745|fgenesh1_pm.C_scaffold_1003525 523 5e-148
Ahg356097 jgi|Araly1|356097|fgenesh1_pg.C_scaffold_7003270 521 2e-147
> Ahg314745 jgi|Araly1|314745|fgenesh1_pm.C_scaffold_1003525
Length=567
Score = 523 bits (283), Expect = 5e-148
Identities = 486/579 (84%), Gaps = 33/579 (6%)
Strand=Plus/Plus
Query 1 ATGATTTTCTCTCTACGTG-GAGATGATTACCGAAATTTCTTCAATCATTTTTCTCCATT 59
||||| ||||||||| | | ||| |||||||||||| |||| ||||| ||||| || ||
Sbjct 1 ATGATCTTCTCTCTAAG-GAGAGCTGATTACCGAAACTTCTCCAATCCCTTTTCCCCGTT 59
Query 60 TCCGCTGAATACTGAATCTGAGCATGTGTTACCCAACGATTTTAAGGTTGATATTCATGA 119
||| |||||||| |||||||| || |||||| |||||| |||||||||||||||||||||
Sbjct 60 TCCTCTGAATACAGAATCTGAACAAGTGTTATCCAACGTTTTTAAGGTTGATATTCATGA 119
Query 120 AATCAAAGGTTTGAGGAACTATGGAATTATGAGTCCTG-CTCCATGGAGCGGTGCTTACC 178
|||||||||||||||||||||||| ||||||| ||| | ||| ||||||||||| |||||
Sbjct 120 AATCAAAGGTTTGAGGAACTATGGCATTATGA-TCCCGTCTCTATGGAGCGGTGGTTACC 178
Query 179 -AAAGCTTCCTTAACTCCTTACCTTCAAACC-CGC-C--C-A-ACAA-CA-CTTTAACCT 229
||| ||||| |||| ||| || || |||| | | | | | | || || | |||||||
Sbjct 179 TAAA-ATTCCTCAACT-CTTTCCCTCTAACCTCACTCGACGACAGAACCAGC-TTAACCT 235
Query 230 CTCTCCTTGTCGATGAGCAAACCCAGCTCG--C-TCTCGTGCCGGCGAGAACCTCGACTA 286
||||| ||| |||||||||| ||| |||| | |||||| ||||||||||||||| |||
Sbjct 236 CTCTCTTTGCCGATGAGCAATTCCAACTCGCTCTTCTCGTACCGGCGAGAACCTCGGCTA 295
Query 287 TGGAA-TCGTTTTCAACGTCACTTAGTCTTTTGACCGTGGCCATTGTTTCGTCTAACGT- 344
||||| || | |||||||||||||||||||||||||||| | ||||| || |||||||
Sbjct 296 TGGAACTC-TATTCAACGTCACTTAGTCTTTTGACCGTGACTATTGTATCATCTAACGCC 354
Query 345 TCCGTATGTAGATGACTTTTCGACAAACCGTGTTACCACTTGCACCAATTCGCTTTATAG 404
|| || || ||||||| ||||||||||||||||| || ||||||||||| |||| ||||
Sbjct 355 TC-GTCCGTGGATGACTCTTCGACAAACCGTGTTATCATTTGCACCAATTTGCTTCATAG 413
Query 405 CTTTGGCTTCCAAACTCTCATGGATCCTTTGTCGAACTATCTTTT-CT-TTCTTTATGTA 462
||||||| ||||| ||||||||||||| |||||||||||| |||| || || ||| ||||
Sbjct 414 CTTTGGCCTCCAAGCTCTCATGGATCCCTTGTCGAACTAT-TTTTGCTATT-TTTGTGTA 471
Query 463 GCATTTGCTTCAACCTTTGTCTGTTGTTGCTA-TTTCGCTTTAAGCCTTGT-TATCTTTG 520
|||||||||| ||||||||| ||||||||||| ||| | |||||||||| | |||| |||
Sbjct 472 GCATTTGCTTTAACCTTTGTTTGTTGTTGCTACTTT-GTTTTAAGCCTT-TCTATCCTTG 529
Query 521 TATCCTTAACTACTT-GTAACCTTGTTTTTATTGGATGA 558
|| || | |||||| | |||||||||| ||||||||||
Sbjct 530 TACCCCTGGCTACTTTG-AACCTTGTTTCTATTGGATGA 567
> Ahg356097 jgi|Araly1|356097|fgenesh1_pg.C_scaffold_7003270
Length=1392
Score = 521 bits (282), Expect = 2e-147
Identities = 476/565 (84%), Gaps = 31/565 (5%)
Strand=Plus/Plus
Query 1 ATGATTTTCTCTCTACGTG-GAGATGATTACCGAAATTTCTTCAATCATTTTTCTCCA-- 57
||||| | ||||||| | | ||| ||||||||| || |||||||||| ||||| ||||
Sbjct 826 ATGATCTCCTCTCTAAG-GAGAGGTGATTACCGGAACTTCTTCAATC-TTTTT-TCCATG 882
Query 58 TTTCCGCTGAATACTGAATCTGAGCATGTGTTACCCAACGATTTTAAGGTTGATATTCAT 117
||||| |||||||| ||||| ||||| |||||| || | |||| ||||||||||||||||
Sbjct 883 TTTCCTCTGAATACCGAATCCGAGCAAGTGTTATCCTATGATTATAAGGTTGATATTCAT 942
Query 118 GAAATCAAAGGTTTGAGGAACTATGGAATTATGAGTCCTGCT-CCATGGAGCGGTGCTTA 176
||||||||||||| |||||||| ||| ||||||| ||| | | ||||||| ||||| |||
Sbjct 943 GAAATCAAAGGTTGGAGGAACTTTGGCATTATGA-TCCCGTTCCCATGGAACGGTGGTTA 1001
Query 177 CCAAAGCTTCCTTAACTCCTTACCTTCAAACCCGCCC-A--AC--AA-CACTTTAACCTC 230
|||||||||||| |||| |||||| | ||||||||| | || || || |||||| ||
Sbjct 1002 CCAAAGCTTCCTCAACTTTTTACCTCCGAACCCGCCCGACGACAGAACCAGTTTAACTTC 1061
Query 231 TCTCCTTGTC-GATGAGCAAACCCAGCTCGC--T-CTCGTGCCGGCGAGAACCTCGACTA 286
|||||||| | |||||||||| ||||||||| | ||||||||||||||||||||| |||
Sbjct 1062 TCTCCTTG-CTGATGAGCAAATCCAGCTCGCTATACTCGTGCCGGCGAGAACCTCGGCTA 1120
Query 287 TGGAATCGTTTTCAACGTCACTTAGTCTTTTGACCGTGGCCATTGTTTCGTCTAACG-TT 345
||||| | | |||||||||||||||||| ||||||||| ||||||| |||||||||| ||
Sbjct 1121 TGGAACCCTATTCAACGTCACTTAGTCTATTGACCGTGACCATTGTATCGTCTAACGCTT 1180
Query 346 CCGTAT-GTAGATGACTT-TTCGACAAACCGTGTTACCACTTGCACCAATTCGCTTTATA 403
| || | || ||||| || ||||||||||||||||| |||||||||||||| |||| ||
Sbjct 1181 C-GT-TCGTGGATGA-TTCTTCGACAAACCGTGTTATCACTTGCACCAATTTGCTTCATT 1237
Query 404 GCTTTGGCTTCCAAACTCTCATGGATCCTTTGTCGAACTATCTTTT-CTTTCTTTATGTA 462
||||||| ||||| |||||||||||||||| ||||| || ||||| || ||||| ||||
Sbjct 1238 CCTTTGGCCTCCAAGCTCTCATGGATCCTTTATCGAATTA-CTTTTGCTATCTTTGTGTA 1296
Query 463 GCATTTGCTTCAACCTTTGTCTGTTGTTGCTATTTCGCTTTAAGCCTTGTTATCTTTGTA 522
|||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||| |||||
Sbjct 1297 GCATTTGCTTTAACCTTTGTTTGTTGTTGCTACTTCTTTTTAAGCCTTCTTATCCTTGTA 1356
Query 523 TCCTTAA-CTACTT-GTAACCTTGT 545
| || |||||| | ||||||||
Sbjct 1357 -CATTTGGCTACTTTG-AACCTTGT 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5