BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15090.1
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480389 jgi|Araly1|480389|fgenesh2_kg.3__3090__AT2G15090.1 2555 0.0
> Ahg480389 jgi|Araly1|480389|fgenesh2_kg.3__3090__AT2G15090.1
Length=1633
Score = 2555 bits (1383), Expect = 0.0
Identities = 1554/1636 (95%), Gaps = 13/1636 (1%)
Strand=Plus/Plus
Query 61 CTACTCTTAGGTTATCTCCAATGAAGAACTTAAAGATGGTTTTCTTCAAGATCCTCTTTA 120
||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 3 CTACTCTTAGGTTATATCCAATGAAGAACTTAAATATGGTTTTCTTCAAGATCTTCTTCA 62
Query 121 TCTCTTTAATGGCAGGATTAGCCATGAAAGGATCTAAGATCAACGTAGAAGATCTCCAAA 180
|||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 63 TCTCTTTAATGGTAGGATTAGCCATGAAAGGATCTTGGATCAACCTAGAAGATCTCCAAA 122
Query 181 AGTTCTCCCTCCACCATACACAGAACAACCTCCAAACCATAAGCCTTCTATTGTTTCTTG 240
| |||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 123 ACTTCTTCCTCCACCATATACAGAACAACCTCCAAACCATAAGCCTTCTCTCGTTTCTTG 182
Query 241 TCGTTTTTGTGTGGATCCTCTACATGTTAACCCGACCTAAACCCGTTTACCTTGTTGATT 300
| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 183 TTGGTTTTGTGTGGATCCTCTACATGTTAACCCGTCCTAAACCCGTTTACCTTGTTGACT 242
Query 301 TCTCCTGCTACCTTCCACCGTCGCATCTCAAGGTCAGTATCCAAACCCTAATGGGACACG 360
||||||||||||| ||||||||||||||||| || |||||||| || |||||||||||||
Sbjct 243 TCTCCTGCTACCTCCCACCGTCGCATCTCAAAGTTAGTATCCATACTCTAATGGGACACG 302
Query 361 CAAGACGTGCAAGAGAAGCAGGCATGTGTTGGAAGAACAAAGAGAGCGACCATTTAGTTG 420
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 303 CGAGACGTGCAAGAGAAGCAGGGATGTGTTGGAAGAACAAAGAGAGCGACCATTTAGTTG 362
Query 421 ACTTCCAGGAGAAGATTCTTGAACGTTCCGGTCTTGGTCAAGAAACCTACATCCCCGAGG 480
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 363 ACTTCCAAGAGAAGATTCTTGAACGTTCCGGTCTTGGTCAAGAAACATACATCCCCGAGG 422
Query 481 GTCTTCAGTGCTTCCCACTTCAGCAAGGCATGGGTGCTTCACGTAAAGAGACGGAAGAAG 540
||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct 423 GTCTTCAGTGCTTCCCACTTCAGCAAGACATGGGGGCTTCACGTAAAGAGACTGAAGAAG 482
Query 541 TAATCTTCGGAGCTCTTGACAATCTTTTTCGCAACACCGGTGTAAAACCTGATGATATCG 600
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 483 TAATATTCGGAGCTCTTGACAATCTTTTTCGCAACACCGGTGTAAAACCTGATGATATTG 542
Query 601 GTATATTGGTGGTGAATTCTAGCACGTTTAATCCAACTCCATCACTCGCCTCCATGATTG 660
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 543 GTATATTAGTGGTGAATTCTAGCACGTTTAATCCTACTCCATCACTCGCTTCCATGATTG 602
Query 661 TGAACAAGTACAAACTCAGAGACAACATCAAGAGTTTGAATCTTGGAGGGATGGGTTGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TGAACAAGTACAAACTCAGAGACAACATCAAGAGTTTGAATCTTGGAGGGATGGGTTGCA 662
Query 721 GTGCCGGAGTTATAGCTGTTGATGTCGCTAAGGGATTACTACAAGTTCATAGGAACACTT 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GTGCTGGAGTTATAGCTGTTGATGTCGCTAAGGGATTACTACAAGTTCATAGGAACACTT 722
Query 781 ATGCTATTGTAGTAAGCACAGAGAACATCACTCAGAACTTATACTTGGGGAAAAACAAAT 840
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 723 ATGCTATTGTAGTAAGCACAGAGAACATCACTCAGAACTTGTACTTGGGGAAAAACAAAT 782
Query 841 CAATGCTAGTCACAAACTGTTTGTTCCGCGTTGGTGGTGCTGCGGTTCTGCTTTCAAACA 900
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 783 CAATGCTAGTCACAAACTGTTTGTTCCGGGTTGGTGGTGCTGCGGTTCTGCTTTCAAACA 842
Query 901 GATCTAGAGACCGTAACCGCGCCAAATACGAGCTTGTTCACACCGTACGGATCCATACCG 960
|||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 843 GATCTAGAGACCGTAAACGCGCAAAATACGAGCTTGTTCACACGGTGCGGATCCATACCG 902
Query 961 GATCAGATGATAGGTCGTTCGAATGTGCGACACAAGAAGAGGATGAAGATGGTATAATTG 1020
|||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 903 GATCAGATGATAGGTCCTTCGAGTGTGCAACACAAGAAGAAGATGAAGATGGTATAATTG 962
Query 1021 GAGTTACCTTGACAAAGAATCTACCTATGGTGGCTGCAAGGACTCTTAAGATAAATATCG 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 963 GAGTTACCTTGACAAAGAATCTACCTATGGTGGCTGCAAGGACTCTTAAGATCAATATTG 1022
Query 1081 CAACTTTGGGTCCTCTTGTACTTCCATTAAAAGAGAAGCTAGCCTTCTTTATTACTTTTG 1140
||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 1023 CAACTTTGGGTCCTCTTGTTCTTCCACTGAAAGAGAAGCTTGCCTTCTTTATTACTTTTG 1082
Query 1141 TCAAGAAGAAGTATTTCAAGCCAGAGTTAAGGAATTATACACCAGATTTCAAGCTTGCCT 1200
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1083 TCAAGAAGAAGTATTTCAAGCCAGAGTTAAGGAACTATACACCAGATTTCAAGCTTGCCT 1142
Query 1201 TTGAGCATTTCTGTATCCACGCTGGTGGAAGAGCTCTAATAGATGAGCTGGAGAAGAACC 1260
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1143 TTGAGCATTTCTGTATCCACGCTGGTGGAAGAGCTCTAATAGATGAGCTAGAGAAGAATC 1202
Query 1261 TTAAGCTTTCTCCGTTACACGTAGAGGCGTCAAGAATGACACTACACAGGTTTGGTAACA 1320
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1203 TTAAGCTTTCTCCGTTACACGTAGAGGCGTCAAGAATGACATTACACAGGTTTGGTAACA 1262
Query 1321 CTTCTTCTAGCTCAATCTGGTACGAGTTAGCTTATACAGAAGCTAAAGGAAGGATGAAGG 1380
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1263 CTTCTTCTAGCTCAATTTGGTACGAGTTGGCTTATACAGAAGCTAAAGGACGGATGAAGG 1322
Query 1381 AAGGAGATAGGATTTGGCAGATTGCTTTGGGGTCAGGTTTTAAGTGTAACAGTTCAGTAT 1440
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1323 AAGGAGATAGGATTTGGCAGATTGCTTTGGGGTCAGGTTTTAAGTGCAACAGTTCAGTCT 1382
Query 1441 GGGTGGCTCTGCG-AGACGTTAAGCCTTCAGCTAACAGTCCATGGGAAGACTGTATGGAT 1499
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GGGTGGCTCTACGCA-ACGTTAAGCCTTCAGCTAACAGTCCATGGGAAGACTGTATGGAT 1441
Query 1500 AGATATCCGGTTGAGATTGATATTTAATTTTATGGTTAAAGAGTCCAATCTATCTTATCT 1559
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1442 AGATATCCGGTTGAGATTGATATTTAATTTTATGGTTAA-GAGTCCAAACTATCTTATCT 1500
Query 1560 TATTTATTTTCG-TTGACATTTTATCCTATGTTTGTT-TT-AAAGAGTTTGCATTGAATA 1616
| |||||||| | |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1501 TGTTTATTTT-GATTGACATTTTATCCTATGTTTGTTCTTTAAAGAGTTTGCATTGAATA 1559
Query 1617 TTAT-TTGTGGTCTATTTGGTA-ACTTTGTTTT-GGTACTTGCTT-AAGTAAGAAGTGAT 1672
|| | |||| ||||||||| | | |||||||| |||||||| || ||||||||||||||
Sbjct 1560 TT-TGTTGTTGTCTATTTGTTTGA-TTTGTTTTTGGTACTTGTTTTAAGTAAGAAGTGAT 1617
Query 1673 GGGTGATACTGATTTT 1688
|| ||||||||| |||
Sbjct 1618 GGATGATACTGAATTT 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63458348170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5