BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15220.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931244 jgi|Araly1|931244|scaffold_303701.1 1138 0.0
Ahg931243 jgi|Araly1|931243|scaffold_303700.1 699 0.0
> Ahg931244 jgi|Araly1|931244|scaffold_303701.1
Length=733
Score = 1138 bits (616), Expect = 0.0
Identities = 691/728 (95%), Gaps = 2/728 (0%)
Strand=Plus/Plus
Query 11 AATACAAGCAAAATACAAAGATGACGTTTCACAAAATCTTTTTTGTAATCTCTCTGATGC 70
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AATACAAGCAAAAGACAAAGATGACGTTTCACAAAATCTTTTTTGTAATCTCTCTAATGC 60
Query 71 TCGTTGTCTCATTAGTTAATGCTGTTGACTACTCGGTCGTCGACAATTCCGGTGACTCTA 130
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TCGTTGTCTCATTGGTTAATGCTGTTGACTACTCGGTCGTCGACAATACCGGTGACTCTG 120
Query 131 CCGGAGGAAGGAGATTCCGGGGAGAGATCGGTGGCATAAGCTACGGCACACAGACACTAA 190
|||| ||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||
Sbjct 121 CCGGTGGAAGGAGATTCCGGGGAGAGATCGGTGGTATAACCTACGGCATACAGTCACTAA 180
Query 191 GATCTGCGACAGACTTTGTGTGGCGTTTGTTCCAACAAACCAACCCTTCAGACAGAAAGT 250
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GATCTGCGACAGACTTCGTGTGGCGTTTGTTCCAACAAACCAACCCTTCGGACAGAAAGT 240
Query 251 CAGTTAC-AAAGATCACACTGTTCATGGAGAACGGTGACGGAGTAGCGTACAACTCTGCA 309
| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 241 CCGTTACGAAA-ATCACACTGTTCATGGAGAACGGTGACGGCGTAGCGTACAACTCTGGA 299
Query 310 AACGAGATACATTTCAACGTGGGATATCTCGCGGGTGTATCGGGAGATGTAAAGAGGGAA 369
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 AACGAGATACATTTCAACGCGGGATATCTCGCGGGTGTATCAGGAGATGTAAAGAGGGAA 359
Query 370 TTTACCGGTGTAGTTTATCATGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCGG 429
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTACCGGTGTAGTTTATCACGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCGG 419
Query 430 GCTCCGGGTGGGCTTATCGAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCT 489
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTCCCGGTGGTCTTATCGAAGGTATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCT 479
Query 490 CCAAGTCATTGGGTCGGGCCTGGTCGTGGTGATAGGTGGGATCAAGGTTATGACGTTACC 549
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 480 CCAAGCCATTGGGTCGGGCCCGGTCGTGGTGATAGGTGGGATCAGGGTTATGACGTTACT 539
Query 550 GCGAGGTTCTTGGATTATTGTAACGGTTTGAGGAATGGGTTTGTGGCCGAGCTGAACAAG 609
|||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 540 GCGAGGTTTTTGGATTATTGTAACGATTTGAGGAATGGATTTGTGGCAGAGCTGAACAAG 599
Query 610 AAGATGAGGAATGGTTATAGTGATGGCTTCTTCGTTGATTTGCTTGGGAAAGACGTGAAT 669
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 600 AAGATGAGGAATGGTTATAGTGATGCCTTCTTCGTTGATTTGCTTGGGAAAGACGTTAAT 659
Query 670 CAATTATGGAGAGAGTACAAGGCCAAGTATGGTcaatgaatacaaacgatacaaaataat 729
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 660 CAACTATGGAGAGAGTACAAGGCCAAGTATGGTCAATGAATACAAACGATATAACATAAT 719
Query 730 ctcaatat 737
| ||||||
Sbjct 720 CCCAATAT 727
> Ahg931243 jgi|Araly1|931243|scaffold_303700.1
Length=640
Score = 699 bits (378), Expect = 0.0
Identities = 534/605 (88%), Gaps = 28/605 (5%)
Strand=Plus/Plus
Query 39 TCACAAAATCTTTTTTGTAATCTCTCTGATGCTCGTTGTCTCATTAGTTAATGCTGTTGA 98
|||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 29 TCACAAAATCTTCCTTGTAATCTCTCTAATGCTCGCCGTCTCATTGGTTAATGCTGTTGA 88
Query 99 CTACTCGGTCGTCGACAATTCCGGTGACTCTACC-GGAGGAAGGAGATTCCGGGGA-GAG 156
|| ||| |||||||||| |||| |||||| || |||||||||||||||| |||| |||
Sbjct 89 CTTCTCAGTCGTCGACACCACCGGCGACTCT-CCTGGAGGAAGGAGATTCC-GGGATGAG 146
Query 157 ATCGGTGGCATAAGCTACGGC-ACACAGACACTAAGATCTGCGACAGACTTTGTGTGGCG 215
||||| ||| || || ||| | ||| ||||| |||||||| || ||||| |||||| |
Sbjct 147 ATCGGCGGCGCCAGTTATGGCGA-ACAAACACTGAGATCTGCAACGGACTTCGTGTGGGG 205
Query 216 TTTGTTCCAACAAACCAACCCTTCAGACAGAA-AGTCAGTTACAAA-GATCACACTGTTC 273
||||||||||||||| |||||||||||||||| | || ||| ||| |||||||||||||
Sbjct 206 TTTGTTCCAACAAACTAACCCTTCAGACAGAAGGGACA-TTA-AAATGATCACACTGTTC 263
Query 274 ATGGAGAACGGTGACGGAGTAGCGTACAACT----CT--GCAAACGAGATACATTTCAAC 327
|||||||||||| | || || || ||||||| || | |||||||||||||||||||
Sbjct 264 ATGGAGAACGGTAATGGCGTGGCCTACAACTCGAACTCGGGAAACGAGATACATTTCAAC 323
Query 328 GTGGGATATCTCGCGGGTGTATCGGGAGATGTAAAGAGGGAATTTACCGGTGTAGTTTAT 387
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GCGGGATATCTCGCGGGTGTATCGGGAGATGTAAAGAGGGAATTTACCGGTGTAGTTTAT 383
Query 388 CATGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCGGGCTCCGGGTGGGCTTATC 447
|| |||||||||||||||||||| ||||| | || ||||||||||||||||
Sbjct 384 CACGAGGTGGTCCATTCTTGGCAATGGAA----------C-GG-TCCGGGTGGGCTTATC 431
Query 448 GAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCTCCAAGTCATTGGGTCGGG 507
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 432 GAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCTCCAAGCCATTGGGTCGGG 491
Query 508 CCTGGTCGTGGTGATAGGTGGGATCAAGGTTATGACGTTACCGCGAGGTTCTTGGATTAT 567
||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 492 CCTGGTCGTGGTGATAGATGGGACCAAGGTTATGATGTTACGGCGAGGTTTTTGGATTAT 551
Query 568 TGTAACGGTTTGAGGAATGGGTTTGTGGCCGAGCTGAACAAGAAGATGAGGAATGGTTAT 627
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TGTAACGATTTGAGGAATGGGTTTGTGGCCGAGCTGAACAAGAAGATGAGGAATGGTTAT 611
Query 628 AGTGA 632
|||||
Sbjct 612 AGTGA 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5