BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15230.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480391 jgi|Araly1|480391|fgenesh2_kg.3__3092__AT2G15230.1 2202 0.0
Ahg931246 jgi|Araly1|931246|scaffold_303703.1 200 2e-50
> Ahg480391 jgi|Araly1|480391|fgenesh2_kg.3__3092__AT2G15230.1
Length=1411
Score = 2202 bits (1192), Expect = 0.0
Identities = 1345/1417 (95%), Gaps = 18/1417 (1%)
Strand=Plus/Plus
Query 53 TTTCAGATAGAAACAGTCCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTG 112
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCAGATAGAAACAGTTCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTG 60
Query 113 ACCTCTCTTACGATCTTCTCCGCCTTAACACAGTCCCATCTCCTCCATGGATCTCCGGTC 172
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 ACCGCTTTTACGATCTTCTCCGCCGTAACACAGTCCCATCTCCTCCATGGATCTCCGGTC 120
Query 173 AATTCTCTCTGCGCTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACAGTATT 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 AATTCTCTCTGCGCTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACACTATT 180
Query 233 CAAACAAAGGATGGTTACATATTAGCTCTTCAACGTGTAGCTTCTCTTGGTCCAAGACTT 292
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAACAAAGGATAATTACATATTAGCTCTTCAACGTGTAGCTTCTCTTGGTCCAAGACTT 240
Query 293 CAATCTGGTCCACCTGTTTTGCTTCAGCACGG-TCTCTTTATGGCTGGAGATGTGTGGTT 351
|||| ||||||||||||||||||||| ||||| | | |||||||||||||||||||||||
Sbjct 241 CAATATGGTCCACCTGTTTTGCTTCAACACGGAT-TATTTATGGCTGGAGATGTGTGGTT 299
Query 352 CTTGAATTCACCAAAAGAGTCACTAGGTTTCATTCTTGCTGATCATGGGTTTGATGTTTG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTGAATTCACCAAAAGAGTCACTAGGTTTCATTCTTGCTGATCATGGGTTTGATGTTTG 359
Query 412 GGTTGGAAATGTTCGTGGTACACGTTACAGTTATGGACATGTAACTTTGTCTGACACTGA 471
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 360 GGTTGGAAATGTTCGTGGTACACGTTATAGTTATGGACATGTAACTTTGTCTGAAACTGA 419
Query 472 TAAGGAGTTTTGGGACTGGAGTTGGCAAGATTTGGCAATGTATGACTTGGCAGAAATGAT 531
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 420 TAAGGAATTTTGGGACTGGAGTTGGCAAGATTTGGCCATGTATGACTTAGCAGAAATGAT 479
Query 532 TCAGTATCTGTATTCAATTTCAAACTCCAAAATTTTCCTTGTTGGACATTCTCAGGGGAC 591
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCAGTATCTATATTCGATTTCAAACTCCAAAATTTTCCTTGTTGGACATTCTCAGGGGAC 539
Query 592 TATCATGTCTTTTGCTGCTCTTACTCAGCCGCATGTTGCGGAAATGGTTGAAGCAGCTGC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATCATGTCTTTTGCTGCTCTTACTCAGCCGCATGTTGCGGAAATGGTTGAAGCAGCTGC 599
Query 652 GTTGCTTTGTCCAATATCATATTTGGATCATGTCACAGCTCCTCTTGTTGAAAGAATGGT 711
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 600 GTTGCTTTGTCCAATATCATATTTGGATCATGTTACAGCTCCACTTGTTGAAAGAATGGT 659
Query 712 TTTTATGCATCTCGATCAGATGGTAGTTGCTCTTGGGCTGCATCAAATAAACTTTAGAAG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTTATGCATCTCGATCAGATGGTAGTTGCTCTTGGGCTGCATCAAATAAACTTTAGAAG 719
Query 772 TGATATGTTAGTTAAACTTGTTGATTCGTTATGCGAAGGGCATATGGATTGCACTGATTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGATATGTTAGTTAAACTTGTTGATTCGTTATGCGAAGGGCATATGGATTGCACTGATTT 779
Query 832 CCTCACATCCATAACAGGGACGAATTGTTGTTTCAACGCCTCGAAGATAGAATACTATCT 891
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 780 CCTCACATCCATAACAGGGACGAATTGTTGTTTCAACGCCTCGAGGATAGAATACTATCT 839
Query 892 AGATTACGAGCCTCACCCATCATCTGTCAAGAATATTCGACATCTTTTCCAAATGATTCG 951
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 AGATTACGAGCCTCACCCATCATCTGTCAAGAATATACGACATCTTTTCCAAATGATTCG 899
Query 952 GAAGGGAACCTTTGCACAATACGACTACGGGTATTTCAAAAATCTACGGACT-TATGGGC 1010
|||||| || |||||||||||||||||||||||| | ||||||||||||| | ||||||
Sbjct 900 GAAGGGGACATTTGCACAATACGACTACGGGTATCTAAAAAATCTACGGA-TATATGGGA 958
Query 1011 TGTCGAAACCTCCAGAATTCATACT-AAGCCACATCCCGGCATCATTACCAATGTGGATG 1069
||||||||||||||||||||| ||| || || ||||||||||||||||||||||||||||
Sbjct 959 TGTCGAAACCTCCAGAATTCAAACTCAA-CCTCATCCCGGCATCATTACCAATGTGGATG 1017
Query 1070 GGGTATGGTGGAACTGATGGTTTAGCAGATGTGACAGATGTGGAACATACTCTCGCGGAA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGGTATGGTGGAACTGATGGTTTAGCAGATGTGACAGATGTGGAACATACTCTCGCGGAA 1077
Query 1130 CTACCTTCCAGTCCAGAGTTACTATATCTTGAGGATTATGGTCACATTGACTTTGTGCTT 1189
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTACCTTCCAGACCAGAGTTACTTTATCTTGAGGATTATGGTCACATTGACTTTGTGCTT 1137
Query 1190 GGCTCAAGTGCTAAAGAAGATGTCTATAAGCACATGATTCAATTTTTCAGAGCAAAGGTT 1249
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 GGCACAAGTGCTAAAGAAGATGTCTATAAGCACATGATTCAATTTTTCAGAGCAA-GGAG 1196
Query 1250 AA-GTCTAGTAGTTGGTAAAATACTAAATACTCTGTTCTGCTTTGCACATATTTATCTTC 1308
|| |||||||||||||||||||||| ||||| ||| |||||||||||||||| ||| |||
Sbjct 1197 AAAGTCTAGTAGTTGGTAAAATACTCAATACACTGCTCTGCTTTGCACATATCTATTTTC 1256
Query 1309 CAC-AAA-TATATGTACACATCTGATTGTAAATATTTTCCT-ATTGAACTAAATTTTCTG 1365
|| ||| ||||||||| ||||||||||||||||||| ||| | || | ||||||| ||
Sbjct 1257 -ACGAAAATATATGTACGCATCTGATTGTAAATATTT-CCTTAATGGTCGAAATTTTATG 1314
Query 1366 CTTCAAAGAGCTACTTAGCACCAATCTAGACATGAACAGATAGAACAATCCAGT-A---A 1421
|| |||||||||| ||| ||||||||||| ||||| |||||||||| |||||| | |
Sbjct 1315 TTTGAAAGAGCTACATAGTACCAATCTAGATATGAAGAGATAGAACAGTCCAGTGAGTGA 1374
Query 1422 CTCAAG-TGAAATAGATTGGTCGTCGATGAGTTTAGA 1457
||| || ||||||| ||||||||| ||||||||||||
Sbjct 1375 CTCGAGGTGAAATATATTGGTCGTTGATGAGTTTAGA 1411
> Ahg931246 jgi|Araly1|931246|scaffold_303703.1
Length=205
Score = 200 bits (108), Expect = 2e-50
Identities = 145/162 (90%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 66 CAGTCCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTGACCTCTCTTACGA 125
|||| ||||| ||||||||||||||| ||||||||||| |||||| || ||||||
Sbjct 1 CAGTTCCGTCTCCGGCGACGATGAAA------CTCGTCGCCGTTTTGACCACTTTTACGA 54
Query 126 TCTTCTCCGCCTTAACACAGTCCCATCTCCTCCATGGATCTCCGGTCAATTCTCTCTGCG 185
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 TCTTCTACGGCGAAACACAGTCCCATCTCCTCCATGGATCTCCGGTCAATTCTCTCTGCG 114
Query 186 CTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACA 227
||||||||||| |||||||||||||| |||||||||||||||
Sbjct 115 CTGATCTCATTGATCCCGCTAATTACACCTGCACTGAACACA 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5