BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15240.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931248 jgi|Araly1|931248|scaffold_303705.1 1332 0.0
> Ahg931248 jgi|Araly1|931248|scaffold_303705.1
Length=800
Score = 1332 bits (721), Expect = 0.0
Identities = 772/797 (97%), Gaps = 2/797 (0%)
Strand=Plus/Plus
Query 92 TCAGAAACAAGGGAGGAGAAGATGTTGCCCACAACTTCCAGATCTCGTTCTTCATCTTCT 151
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAGGAACAAGGGAGGAGAAGATGTTGCCCACAACTTCCAGATCTCGTTCTTCATCTTCT 60
Query 152 TCATCCCGAGCTAATCCAATGTTCCTTCAGTACTTTCGTCGTATCGTTAAGTGGCAGCAA 211
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCATCCCGAGCTAATCCAATGTTCCTTCAGTACTTTCGTCGTATCGTCAAGTGGCAGCAA 120
Query 212 ATGGATGTTGAATATACTTTCTGGCAAATGCTTAACCTTTGTACATCTCCGAAAGTTGTC 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGATGTTGAATATACTTTCTGGCAAATGCTTAACCTTTGTACATCTCCGAAAGTTGTC 180
Query 272 TATCAACACACTAAGTATCACAAACAAACTAAGAACCAATGGGCACGTGATGACCCTGCG 331
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATCAACACACCAAGTATCACAAACAAACTAAGAACCAATGGGCACGTGATGACCCTGCG 240
Query 332 TTTATTGTGATCTGTAGCCTGCTTCTTGTTGTTGCAACTGTAGCCTATTGTGTCACGTAT 391
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TTTATTGTGATCTGTAGCCTGCTTCTTGTTGTTGCCGCTGTAGCCTATTGTGTCACGTAT 300
Query 392 GACCATAGTAGCTCTCATGCCGTCGTCGTAGTCGTTTCAGTTTTGTTCACCCATTTCTTA 451
||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GACCATAGTGGCTCTCATGCTGTCGTCGTAGTCGTTTCAGTTTTGCTCACCCATTTCTTA 360
Query 452 ATCACCGGAGCAGTTATAGCTACATGCTGTTGGTTTTTGACAAATTCTTACCTTCGCGAG 511
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATCACCGGAACAGTTATAGCTACATGCTGTTGGTTTTTGACAAACTCTTACCTTCGCGAG 420
Query 512 GAGACTCCAAACAGTCATGTGGTGGAACAACGCGTTGAATGGCTGTATACATTTGATGTT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGACTCCAAACAGTCATGTGGTGGAACAACGCGTTGAATGGCTGTATACATTTGATGTT 480
Query 572 CACTGCAACTCGTTCTTTCCAATGTTTGTGCTGCTCTACGTCGTACATTACTTCTTATCA 631
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CACTGCAACTCGTTCTTTCCAATGTTTGTGCTGCTCTACGTCGTACATTATTTCTTATCA 540
Query 632 CCGCTCCTGATAGCACACGGATTCATCCCTTTACTGCTATCGAATCTGCTTTTCATGGTC 691
|| || |||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CCACTGCTGATAGCGCATGGATTCATCCCTTTACTACTATCGAATCTGCTTTTCATGGTC 600
Query 692 GGGGCTTCGTACTACCATTATCTTAACTTCCTAGGATATGACGTGCTTCCATTTTTGGAG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGGGCTTCGTACTACCATTATCTTAACTTCCTAGGATATGACGTGCTTCCATTTTTGGAG 660
Query 752 CGAACAACATTCTTCCTCTACCCAATCGGAGTTGTCATTGTCCTGTCTCCTATTCTTATC 811
||||||||||||||||||||||||||||| || || ||||||||||| |||||||| |||
Sbjct 661 CGAACAACATTCTTCCTCTACCCAATCGGGGTCGTGATTGTCCTGTCCCCTATTCTGATC 720
Query 812 TTAAGCGGATTCAACCCGTCAAGATATTTCATGAACATGTACTTCAGCCAAAGGTTATaa 871
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 721 TTAAGCGGATTCAACCCGTCAAGATACTTCATGAACTTGTACTTCAGCCAAAGGTTATAA 780
Query 872 aaaaaaCAGCCACATCA 888
|||| |||||||||||
Sbjct 781 AAAA--CAGCCACATCA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5