BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15260.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906260 jgi|Araly1|906260|Al_scaffold_0003_3388 556 9e-158
Ahg931258 jgi|Araly1|931258|scaffold_303715.1 429 2e-119
> Ahg906260 jgi|Araly1|906260|Al_scaffold_0003_3388
Length=789
Score = 556 bits (301), Expect = 9e-158
Identities = 445/513 (87%), Gaps = 15/513 (3%)
Strand=Plus/Plus
Query 457 TGTATCGGCTCAGCCTATAATGCAAAGGGCTTCATGGAATGTCCAAACTGTAGAAATATA 516
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 286 TGTATCGGCTCAGCATATAATGCAAAGGGCTTCATGGAATGTCCAAACTGTAGGAATATA 345
Query 517 GAACCGGGTCATTGGCAGTTTTCAGACGGTACTCACTTCAATCCCAATGGTATGATTGCT 576
||||| ||| | ||||||||| ||||||| || || |||||| || || ||||||||||
Sbjct 346 GAACCAGGTGAATGGCAGTTTGCAGACGGCACCCATTTCAATGCCGATAATATGATTGCT 405
Query 577 AATAATgaagaagaagaagaagaCAATGATCCTGGATCCTTTTCTCAGAT-GATTGTAAA 635
||| |||| ||| |||||||||||||||||||||||| ||| ||||| || |||||||||
Sbjct 406 AATGATGATGAACAAGAAGAAGACAATGATCCTGGATGCTTCTCTCA-ATTGATTGTAAA 464
Query 636 ATCAGAGGTGTGCCCTTTTGGATGCTTAGGTCAACGGTATCCTTTTGATCCCTTAGGAAG 695
||| |||||||||||||||||||||||||||||||| ||||| ||| || ||||||||
Sbjct 465 ATCGGAGGTGTGCCCTTTTGGATGCTTAGGTCAACGATATCCCTTTC-TC--TTAGGAAG 521
Query 696 ATCCGACATCTCAATGATTAATGCACCAATGAATTTGTCATGTCCAAGCA-CTAGCACGG 754
||||| |||||||||| |||||||||||||| |||||||| | |||||| | |||||
Sbjct 522 ATCCGGCATCTCAATGGTTAATGCACCAATGGCTTTGTCATATGCAAGCAGC-AGCACAA 580
Query 755 TGCAACTTAACCCATCTGACGTATGGGAGAGTACTCAGCCTTTCCTGTCATCGAGGCATC 814
|||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||
Sbjct 581 CGCAACTTAACCCATCTAACGTATGGGAGAGTACTCAGCCTTTCTTGTCGTTGAGGCATC 640
Query 815 ACCT-CATGGTCGAAGATGAGAT-ATACCGCATGATTTACGGTGACAGAATTGAAATGGG 872
| | |||||||||| |||| || ||||||||||||||| |||||| ||| ||||||||
Sbjct 641 AT-TGCATGGTCGAACATGA-ATTATACCGCATGATTTATGGTGACCGAAACGAAATGGG 698
Query 873 AGAAAG-AAGTGGCAACCATAGAGGCAG-AGAAAGCAATGGAAATGGTGATAACGGAGGA 930
|||| | ||| ||||||||| ||||||| |||| | ||| |||| || | ||||||||
Sbjct 699 AGAA-GTAAGCGGCAACCATGGAGGCAGCAGAA-GAAATAGAAACAATGGTGACGGAGGA 756
Query 931 AGCAGCACCTTTGGTGGCAATGGCAACGGCAAT 963
||| ||| ||||||||| |||||||||||||||
Sbjct 757 AGCGGCAACTTTGGTGGAAATGGCAACGGCAAT 789
Score = 274 bits (148), Expect = 1e-72
Identities = 192/213 (90%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 93 CAATGTTAATGAAGGCAA-AAGATTTGCTTTTGATCTCAACGTGGAACCTGTTGATGAAA 151
||||||||||||||| || || ||| |||||||| |||||| | ||||||||||||||||
Sbjct 12 CAATGTTAATGAAGG-AACAAAATTCGCTTTTGACCTCAACCTTGAACCTGTTGATGAAA 70
Query 152 CTTTGGACCTCAACGTTGAACCTGTTGATGAAGAGAATCGTGATGCTCTGAATCCTGTTG 211
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 71 CTTTGGACATCAACGTTGATCATGTTGATGAAGAGAATCGTGATGCTCTGAATCCTGTTG 130
Query 212 ATGAAGAGAATCATGACTCTATGAATCATGTTGCTAAACAGAATCATGATTCTTCTAATC 271
|||||||||||||| |||||||||||||||||| | || |||||||||||||| |||| |
Sbjct 131 ATGAAGAGAATCATAACTCTATGAATCATGTTGATGAAGAGAATCATGATTCT-CTAAAC 189
Query 272 A-TGTTGATCAAGAGATTCGTGATTCTCAGAAT 303
| ||||| |||||||||||||||||| ||||
Sbjct 190 CCTATTGATGAAGAGATTCGTGATTCTCCGAAT 222
> Ahg931258 jgi|Araly1|931258|scaffold_303715.1
Length=584
Score = 429 bits (232), Expect = 2e-119
Identities = 448/545 (82%), Gaps = 44/545 (8%)
Strand=Plus/Plus
Query 164 ACGTTGAACCTGTTGATGAAGAGAATCGTGATGCT-CTGAATCCTGTTGATGAAGAGAAT 222
||||||| | |||| |||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 34 ACGTTGATCATGTTAATGAAGAGAATCGTGATGCTAC-GAATCTTGTTGATGAAGAGAAT 92
Query 223 CATGACTCTATGAATCATGTTGCTAAACAGAATCATGATTCTTCT-AATCATGTTGATCA 281
||||||||| |||||||||||| | || |||||| |||||| ||| |||| ||||||| |
Sbjct 93 CATGACTCTCTGAATCATGTTGATGAAGAGAATCGTGATTC-TCTGAATCTTGTTGATGA 151
Query 282 AGAGATTCGTGATTCTCAGAATCTTATTGATGAAGAGAA---TCATGATTCTCC-AA--A 335
||||||||||||||||| ||||| ||||||||||||||| | ||||||||| || |
Sbjct 152 AGAGATTCGTGATTCTCTGAATCCTATTGATGAAGAGAACCGCCGTGATTCTCCGAATGA 211
Query 336 ---AGA--CT--CA--GA-T-T-A-TCT--CGGTGACTTGGATTTGTGTTCGATTTGTCG 380
|| || || || | | | ||| | |||||||||||| ||||| ||||||||
Sbjct 212 CTCGGATTCTCCCAGTGACTCTGATTCTCCCAGTGACTTGGATTCGTGTTTGATTTGTCA 271
Query 381 TGGGGCTTTGGTCAATGAGAATGATGTTCAACGAACACTGGTTACACTTAAATGTGTTCA 440
|||| || | |||||||| ||||||||||| |||||||| || ||||||||||||| |||
Sbjct 272 TGGGACTCTAGTCAATGATAATGATGTTCATCGAACACTTGTGACACTTAAATGTGCTCA 331
Query 441 CAAGTTTCA-CCTCGACTGTATCGGCTCAGCCTATAATGCAAAGGGCTTCATGGAATGTC 499
||||||||| || ||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 332 CAAGTTTCATCC-CGATTGTATTGGCTCAGCATATAATGCAAAGGGTTTCATGGAATGTC 390
Query 500 CAAACTGTAGAAATATAGAACCGGGTCATTGGCAGTTTT-CAGACGGTACTCACTTCAAT 558
|||||||||| ||||||||||| ||||| |||| ||||| || |||| || || || |||
Sbjct 391 CAAACTGTAGGAATATAGAACCAGGTCAATGGC-GTTTTGCAAACGGCACCCATTTTAAT 449
Query 559 CCCAATGGTATGATTGCTAATAATgaagaagaagaagaagaCAATGATCCTGGATCCTTT 618
|| || |||||||||| | |||| ||| |||||||||||||||||||||||| |||
Sbjct 450 GCCGATAATATGATTGCTGGTGATGATGAACAAGAAGAAGACAATGATCCTGGATACTTC 509
Query 619 TCTCAGATGATTGTAAAATCAGAGGTGTGCCCTTTTGGATGCTTAGGTCAACGGTATCCT 678
|||| | | | | ||||||||||||||||||||||||||||| ||||||
Sbjct 510 TCTC--A--A---T----T----GGTGTGCCCTTTTGGATGCTTAGGTCAACAATATCCT 554
Query 679 TTTGA 683
|||||
Sbjct 555 TTTGA 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5