BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15270.1 Length=841 Score E Sequences producing significant alignments: (Bits) Value Ahg480392 jgi|Araly1|480392|fgenesh2_kg.3__3093__AT2G15270.1 920 0.0 > Ahg480392 jgi|Araly1|480392|fgenesh2_kg.3__3093__AT2G15270.1 Length=627 Score = 920 bits (498), Expect = 0.0 Identities = 590/633 (93%), Gaps = 12/633 (2%) Strand=Plus/Plus Query 65 TGTGACCGGAATTAGGGTTTCGACAATGTCGTCCGGGAAGCCAAAGCAAGGC---GACAC 121 |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| Sbjct 1 TGTGACCGGAATTAGGGTTTTGACGATGTCGTCCGGGAAGCCAAAGCAAGGCGGTGACAC 60 Query 122 ACGATTGGTGGTTGCTGCCACTACGGCGTCGGCATTGATGGAAGCGAAGAAGGCTGATCA 181 ||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| Sbjct 61 ACGATTGGTGGTTGCTGCCACGACGGCGTCGGCATTGATGGAAGCCAAGAAGTCTGATCA 120 Query 182 CGGAGGATCTTCGTCTATCGTTGAGTATAAACCGCCGGTGATGCTTGAAGATGAAGAAGA 241 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGGAGGATCTTCTTCTATCGTTGAGTATAAACCGCCGGTGATGCTTGAAGATGAAGAAGA 180 Query 242 TCTAGAAGTAAAGCTCCGACGTATCCTTGAGAACGTTCCTGTTCGTGTTAGTAATACTTC 301 ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 181 TCTAGAAGTAAAGCTTCGACGAATCCTTGAGAACGTTCCTGTTCGTGTTAGCAATACTTC 240 Query 302 TGGAAGTTCCGCTGGTTCTGGTTCTGGAGATTTCCATCAGTACCGGCAAATGAGGCGGAG 361 ||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| || Sbjct 241 TGGAAGTTCTGCTGGTTCTGGTTCGGGTGATTTTCATCAGTACCGGCAAATGAGGCGAAG 300 Query 362 AGAACAAGACCGACTAACAAGGATGGATATTGACTATAACAAGCGGTTAAAAATGGCAGA 421 ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 301 AGAACAAGACCGACTCACAAGGATGGATATTGACTATAACAAGAGGTTACAAATGGCAGA 360 Query 422 GTTTACTATAAGAAGAGAAGAGAAAC-AGAAAGCTGCAGAGgaaaaaacatcgaagaagc 480 |||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||| Sbjct 361 GTTTACTATAAGAAGAGAAGAGAAACTA-AAAGCTGCAGAGGAGAAAACATCAAAGAAGC 419 Query 481 gtttgaaacgccaaaagaagaagcagaagaaacaggagaagaagca-aaaaccaaacACT 539 |||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||| Sbjct 420 GTTTGAAACGCCAAAAGAAGAAGCAGAAAAAACAAGAGAAGAAG-AGAAAACCAAACACT 478 Query 540 ACTGAGGAAGAAGTAAAGCAACCGAGAGTAGGAGAAATATCATCTGACGAAGGTGAAGAT 599 ||||||||| ||| ||||||||| | || ||||||||||||||||||||| || | | | Sbjct 479 ACTGAGGAACAAGAAAAGCAACCTAAAGAAGGAGAAATATCATCTGACGA-GG--ACGGT 535 Query 600 GAAG-TAGAAGAAGAGTCTGTGCTAGAACCTTTACGTCCAATGTTTAATATCAAGTTCCA 658 |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 536 GAAGAT-GAAGAAGAGTCTGTGCTAGAACCTTTACGTCCGATGTTTAATATCAAGTTCCA 594 Query 659 AGAGAACCGTTCATAGCTTTTATTGTGACATGT 691 |||||||||| |||||||||| ||||||||||| Sbjct 595 AGAGAACCGTGCATAGCTTTTCTTGTGACATGT 627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31108300272 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5