BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15270.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480392 jgi|Araly1|480392|fgenesh2_kg.3__3093__AT2G15270.1 920 0.0
> Ahg480392 jgi|Araly1|480392|fgenesh2_kg.3__3093__AT2G15270.1
Length=627
Score = 920 bits (498), Expect = 0.0
Identities = 590/633 (93%), Gaps = 12/633 (2%)
Strand=Plus/Plus
Query 65 TGTGACCGGAATTAGGGTTTCGACAATGTCGTCCGGGAAGCCAAAGCAAGGC---GACAC 121
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 1 TGTGACCGGAATTAGGGTTTTGACGATGTCGTCCGGGAAGCCAAAGCAAGGCGGTGACAC 60
Query 122 ACGATTGGTGGTTGCTGCCACTACGGCGTCGGCATTGATGGAAGCGAAGAAGGCTGATCA 181
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 61 ACGATTGGTGGTTGCTGCCACGACGGCGTCGGCATTGATGGAAGCCAAGAAGTCTGATCA 120
Query 182 CGGAGGATCTTCGTCTATCGTTGAGTATAAACCGCCGGTGATGCTTGAAGATGAAGAAGA 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGAGGATCTTCTTCTATCGTTGAGTATAAACCGCCGGTGATGCTTGAAGATGAAGAAGA 180
Query 242 TCTAGAAGTAAAGCTCCGACGTATCCTTGAGAACGTTCCTGTTCGTGTTAGTAATACTTC 301
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TCTAGAAGTAAAGCTTCGACGAATCCTTGAGAACGTTCCTGTTCGTGTTAGCAATACTTC 240
Query 302 TGGAAGTTCCGCTGGTTCTGGTTCTGGAGATTTCCATCAGTACCGGCAAATGAGGCGGAG 361
||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 241 TGGAAGTTCTGCTGGTTCTGGTTCGGGTGATTTTCATCAGTACCGGCAAATGAGGCGAAG 300
Query 362 AGAACAAGACCGACTAACAAGGATGGATATTGACTATAACAAGCGGTTAAAAATGGCAGA 421
||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 AGAACAAGACCGACTCACAAGGATGGATATTGACTATAACAAGAGGTTACAAATGGCAGA 360
Query 422 GTTTACTATAAGAAGAGAAGAGAAAC-AGAAAGCTGCAGAGgaaaaaacatcgaagaagc 480
|||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 361 GTTTACTATAAGAAGAGAAGAGAAACTA-AAAGCTGCAGAGGAGAAAACATCAAAGAAGC 419
Query 481 gtttgaaacgccaaaagaagaagcagaagaaacaggagaagaagca-aaaaccaaacACT 539
|||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 420 GTTTGAAACGCCAAAAGAAGAAGCAGAAAAAACAAGAGAAGAAG-AGAAAACCAAACACT 478
Query 540 ACTGAGGAAGAAGTAAAGCAACCGAGAGTAGGAGAAATATCATCTGACGAAGGTGAAGAT 599
||||||||| ||| ||||||||| | || ||||||||||||||||||||| || | | |
Sbjct 479 ACTGAGGAACAAGAAAAGCAACCTAAAGAAGGAGAAATATCATCTGACGA-GG--ACGGT 535
Query 600 GAAG-TAGAAGAAGAGTCTGTGCTAGAACCTTTACGTCCAATGTTTAATATCAAGTTCCA 658
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 GAAGAT-GAAGAAGAGTCTGTGCTAGAACCTTTACGTCCGATGTTTAATATCAAGTTCCA 594
Query 659 AGAGAACCGTTCATAGCTTTTATTGTGACATGT 691
|||||||||| |||||||||| |||||||||||
Sbjct 595 AGAGAACCGTGCATAGCTTTTCTTGTGACATGT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5