BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15280.1 Length=1011 Score E Sequences producing significant alignments: (Bits) Value Ahg480394 jgi|Araly1|480394|fgenesh2_kg.3__3095__AT2G15280.1 1175 0.0 > Ahg480394 jgi|Araly1|480394|fgenesh2_kg.3__3095__AT2G15280.1 Length=797 Score = 1175 bits (636), Expect = 0.0 Identities = 737/786 (94%), Gaps = 5/786 (1%) Strand=Plus/Plus Query 23 TCGCTGCAATGGAAGAATCTGTTCATCAATCGATACGATTCGGCTCAGTTGCAGATTTAA 82 ||||| |||||||||||||||||||||||||||| || || ||||||||||| ||||| | Sbjct 1 TCGCTACAATGGAAGAATCTGTTCATCAATCGATTCGCTTTGGCTCAGTTGCGGATTTGA 60 Query 83 TCATGTGGAAGAATCGACGCGGAGGGTTTCTTCTACTTGGATCAACGACATTGTTATGGT 142 | ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| Sbjct 61 TTATGTGGAAGAATCGACGCGTAGGGTTTCTTTTACTTGGATCAACAACATTGTTATGGT 120 Query 143 TCCTCTTTGAGAAATGTGGATACAGTTTCTTCCCCTTTGTTGTTAATACTCAGCTTC-TC 201 |||| || |||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 121 TCCTATTCGAGAAATGTGGATACAGTTTCTTCCCTTTTGTTGTTAATACTCAGCTTCTTC 180 Query 202 TCCGTCGTTATACTCTTCCTCTGGGCCAAATCTGCTATTCTCTTCAATAGGCCTATGCCT 261 | ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 T-CGTTGTTATTCTCTTCCTCTGGGCCAAATCTGCTATTCTCTTCAATAGACCTATGCCT 239 Query 262 CAACTACCTAATCTTGAAATCACTGAGGAATTTGTGTTTATGGTGGCTGATGCTATACGA 321 || |||||||||||||||||| |||||| || |||||||||||||||||||||| ||||| Sbjct 240 CAGCTACCTAATCTTGAAATCTCTGAGGCATCTGTGTTTATGGTGGCTGATGCTCTACGA 299 Query 322 GTCTGGATTAATACCGTGCTCGCTGTTGCTCGTGAGATTTACGTGGGAAGAAATGCAAAG 381 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 300 GTTTGGATTAATACCGTGCTCGCTGTTGCTCGTGAGATTTACGTTGGAAGAAATGCAAAG 359 Query 382 CAACTCTTTCGGGTGAGTGTTGTGTTGTGGACAGTATCATTTGTTGGAAATTTCTTAAAC 441 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 CAACTCTTTCGGGTGAGTGTTGTGTTGTGGACAGTATCGTTTGTTGGAAATTTCTTAAAC 419 Query 442 TTCCTCACAATACTCTATCTTGGTGTTGTTCTGAGTCTGTTGATTCCCTTTTTGTACGAG 501 |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| Sbjct 420 TTCCTCACAATACTCTATCTTGGTGTTGTTCTCAGTCTGTTGATTCCCATTCTGTACGAG 479 Query 502 AGATACCAGGATCTTATTGACGAGAAGCTATCTTTAACTCATCGAGTCATTCAGACACAG 561 ||||| || |||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 480 AGATATCAAGATCACATTGACGAAAAGCTATCTTTAACACATCGAGTCATTCAGACACAA 539 Query 562 TACAGGAAGATCGATGAAAGATTACTACAGAAGATTATTGCTAAGCCCACAAATAAGATA 621 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TACAGGAAGATCGACGAAAGATTACTACAGAAGATTATTGCTAAGCCCACAAATAAGATA 599 Query 622 AAGAAGATGCAATAGTGAAAGAAAACAAGACAGAATTGGACTGAGTGGGAAGGTAAAACT 681 |||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| Sbjct 600 AAGAAGATGCAATAGTGAAAGATA-CAAGACAGAGTAGGACTGAGTGGGAAGGTAAAACT 658 Query 682 AAGTAAAGAGTGCAACAGGCGACGTAACTAGCTATGATTGTAGATGAATTAGAGAAGTTG 741 |||||||| ||| ||||||||||||||| |||||||| ||||||||| | |||||||||| Sbjct 659 AAGTAAAG-GTGAAACAGGCGACGTAACAAGCTATGAGTGTAGATGACT-AGAGAAGTTG 716 Query 742 AGACTTGAGTGTGGTTTTGTCATGAACCAACCCTTCATTTGATTCTCTCTTTATATAGAC 801 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 717 AGACTTGAGTGTGGTTTTGTCATGAATCAACCCTTCATTTGATTCTCTCTTTATAGAGAC 776 Query 802 ACTGTG 807 |||||| Sbjct 777 ACTGTG 782 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37589196162 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5