BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15280.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480394 jgi|Araly1|480394|fgenesh2_kg.3__3095__AT2G15280.1 1175 0.0
> Ahg480394 jgi|Araly1|480394|fgenesh2_kg.3__3095__AT2G15280.1
Length=797
Score = 1175 bits (636), Expect = 0.0
Identities = 737/786 (94%), Gaps = 5/786 (1%)
Strand=Plus/Plus
Query 23 TCGCTGCAATGGAAGAATCTGTTCATCAATCGATACGATTCGGCTCAGTTGCAGATTTAA 82
||||| |||||||||||||||||||||||||||| || || ||||||||||| ||||| |
Sbjct 1 TCGCTACAATGGAAGAATCTGTTCATCAATCGATTCGCTTTGGCTCAGTTGCGGATTTGA 60
Query 83 TCATGTGGAAGAATCGACGCGGAGGGTTTCTTCTACTTGGATCAACGACATTGTTATGGT 142
| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 61 TTATGTGGAAGAATCGACGCGTAGGGTTTCTTTTACTTGGATCAACAACATTGTTATGGT 120
Query 143 TCCTCTTTGAGAAATGTGGATACAGTTTCTTCCCCTTTGTTGTTAATACTCAGCTTC-TC 201
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 121 TCCTATTCGAGAAATGTGGATACAGTTTCTTCCCTTTTGTTGTTAATACTCAGCTTCTTC 180
Query 202 TCCGTCGTTATACTCTTCCTCTGGGCCAAATCTGCTATTCTCTTCAATAGGCCTATGCCT 261
| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 T-CGTTGTTATTCTCTTCCTCTGGGCCAAATCTGCTATTCTCTTCAATAGACCTATGCCT 239
Query 262 CAACTACCTAATCTTGAAATCACTGAGGAATTTGTGTTTATGGTGGCTGATGCTATACGA 321
|| |||||||||||||||||| |||||| || |||||||||||||||||||||| |||||
Sbjct 240 CAGCTACCTAATCTTGAAATCTCTGAGGCATCTGTGTTTATGGTGGCTGATGCTCTACGA 299
Query 322 GTCTGGATTAATACCGTGCTCGCTGTTGCTCGTGAGATTTACGTGGGAAGAAATGCAAAG 381
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GTTTGGATTAATACCGTGCTCGCTGTTGCTCGTGAGATTTACGTTGGAAGAAATGCAAAG 359
Query 382 CAACTCTTTCGGGTGAGTGTTGTGTTGTGGACAGTATCATTTGTTGGAAATTTCTTAAAC 441
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 CAACTCTTTCGGGTGAGTGTTGTGTTGTGGACAGTATCGTTTGTTGGAAATTTCTTAAAC 419
Query 442 TTCCTCACAATACTCTATCTTGGTGTTGTTCTGAGTCTGTTGATTCCCTTTTTGTACGAG 501
|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 420 TTCCTCACAATACTCTATCTTGGTGTTGTTCTCAGTCTGTTGATTCCCATTCTGTACGAG 479
Query 502 AGATACCAGGATCTTATTGACGAGAAGCTATCTTTAACTCATCGAGTCATTCAGACACAG 561
||||| || |||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 480 AGATATCAAGATCACATTGACGAAAAGCTATCTTTAACACATCGAGTCATTCAGACACAA 539
Query 562 TACAGGAAGATCGATGAAAGATTACTACAGAAGATTATTGCTAAGCCCACAAATAAGATA 621
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACAGGAAGATCGACGAAAGATTACTACAGAAGATTATTGCTAAGCCCACAAATAAGATA 599
Query 622 AAGAAGATGCAATAGTGAAAGAAAACAAGACAGAATTGGACTGAGTGGGAAGGTAAAACT 681
|||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||
Sbjct 600 AAGAAGATGCAATAGTGAAAGATA-CAAGACAGAGTAGGACTGAGTGGGAAGGTAAAACT 658
Query 682 AAGTAAAGAGTGCAACAGGCGACGTAACTAGCTATGATTGTAGATGAATTAGAGAAGTTG 741
|||||||| ||| ||||||||||||||| |||||||| ||||||||| | ||||||||||
Sbjct 659 AAGTAAAG-GTGAAACAGGCGACGTAACAAGCTATGAGTGTAGATGACT-AGAGAAGTTG 716
Query 742 AGACTTGAGTGTGGTTTTGTCATGAACCAACCCTTCATTTGATTCTCTCTTTATATAGAC 801
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 717 AGACTTGAGTGTGGTTTTGTCATGAATCAACCCTTCATTTGATTCTCTCTTTATAGAGAC 776
Query 802 ACTGTG 807
||||||
Sbjct 777 ACTGTG 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5