BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15290.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480395 jgi|Araly1|480395|fgenesh2_kg.3__3096__AT2G15290.1 1607 0.0
> Ahg480395 jgi|Araly1|480395|fgenesh2_kg.3__3096__AT2G15290.1
Length=1060
Score = 1607 bits (870), Expect = 0.0
Identities = 999/1062 (94%), Gaps = 5/1062 (0%)
Strand=Plus/Plus
Query 22 AAAATATGCAATCACTACTCTTGCCGCCGGCGAGTTCCTCCGGCGTATCCGCCGTCGCGC 81
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 1 AAAATATGCAGTCACTACTCTTACCGCCGGCGAGCTCCTCCGGCGTATCCGCGGTTGCGC 60
Query 82 TACGGCCAGGTTTCCAGCACTCATTTAACCACCAAAGCCTCTCTACTCGCTCCCTGCCAT 141
|||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 61 TACGACCAGGTGTCCAGCACTCATTCAACCACCAAAGCCTCTCTACTCGCTCCCAGCCAT 120
Query 142 TGTTTAATCCACTTCTCTTAGCTCCGAAGAAGAAAACCACCATCTCCTCATATCAATCGC 201
| |||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||
Sbjct 121 CGCTTAATCCACTTCTCTTCGCTCCGAAGAGGAAAGCCACCATCTCCTCATACCAATCGC 180
Query 202 CACCGTCTCTGTCCGTCTACGGTTTCCAAATCGGAGGATCTAAACCTAGTTTCACACCAT 261
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CACCGTCTTTGTCCGTCTACGGTTTCCAAATCGGAGGATCTAAACCTAGTTTCGCACCAT 240
Query 262 CCACGGTGGCATTTTCATATCCGACTTCTCCGTCTTCCGTTCCCGGTGATAATGAGGTCG 321
|||| ||||||||||| | | |||| ||||| ||||||||| ||||||||||||||||||
Sbjct 241 CCACTGTGGCATTTTCCTCTTCGACGTCTCCTTCTTCCGTTTCCGGTGATAATGAGGTCG 300
Query 322 ACAAAGCAAAACTCGCTCAGGTTGCAAAGAGATTGGAGAAGACTTCAAGGTACTTTAAGA 381
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ACAAAGCAAAACTCGCTCAGGTTGCAAAGAGATTGGAGAAGACTTCTAGGTACTTTAAGA 360
Query 382 GACTAGGGAGTATTGGTTTCTGGGGGCAGCTTGTGTCAACTGTGGTTGCAGCTGTGATTC 441
| || |||||||||||||| ||||||||||||||||||||||| || || || |||||||
Sbjct 361 GGCTGGGGAGTATTGGTTTTTGGGGGCAGCTTGTGTCAACTGTTGTGGCGGCGGTGATTC 420
Query 442 TATCCTTCTCCATTGTTGTAACTGGGAAACCTACTTCACCTGCTACTTTCTATGCTACTG 501
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATCCTTCTCAATTGTTGTAACTGGGAAACCTACTTCACCTGCTACTTTCTATGCTACTG 480
Query 502 CTAGTGGGATTGCTGCTGCGTTTGTCTCGGTTTTCTGGTCGTTTGGGTATATTCGGCTCT 561
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGTGGGATTGCTGCTTCGTTTGTCTCGGTTTTCTGGTCGTTTGGGTATATTCGGCTCT 540
Query 562 CCGAGAGGCTCCGTCGAACTTCCATCGACCCTGCCAAGG---CGCCGCCTCGCGCTGATG 618
| ||||||||||||||||||||||||||||||||||||| | || ||||| |||||||
Sbjct 541 CAGAGAGGCTCCGTCGAACTTCCATCGACCCTGCCAAGGTAACCCCTCCTCGTGCTGATG 600
Query 619 TTGTGAAAGGTTTGAGGAGCGGGATTATGGTAAATATTTTGGGAATGGGATCAGCACTAC 678
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 601 TTGTGAAAGGTTTGAGGAGCGGGATTATGGTAAATATTTTGGGAATGGGGGCAGCACTTC 660
Query 679 TCGGGATGCAAGCAACAGTTGGATTTTTAGTTGCAAAGGCTTTAACAACTTCAGCAAACC 738
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCGGGATGCAAGCAACGGTTGGATTTTTAGTTGCAAAGGCTTTAACAACTTCAGCAAACC 720
Query 739 CTTTCTACCAAGGAGTCTCTCAGGGATACAGTCCCGTTCTTGCTCTTGATGTCTTCCTAG 798
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 CTTTCTACCAGGGAGTCTCTCAGGGATACAGCCCCGTTCTTGCTCTTGATGTCTTCCTAG 780
Query 799 TTCAGGCATCGGCGAACACCTTACTCTCTCATTTCCTTGGTCTTGTTTGCTCGTTGGAGC 858
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 781 TTCAGGCATCGGCGAACACCTTACTCTCTCATTTCCTTGGCCTTGTTTGCTCATTGGAGC 840
Query 859 TGTTGCGGTCTGTGACAGTGCCCAATTCGGAATCTGTCGTAGTTCCTAAGGTTGCTTGAG 918
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 TGTTGCGGTCTGTGACAGTGCCCAATTCGGAATCTGTTGTAGTTCCTAAGGTTGCTTGAG 900
Query 919 TTTCTGCCTTTTTCAGCCTCACTTCATGTATTCATAAACGTTGAAAGCTGGGGCTGTTGT 978
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 901 TTTCTGCCTTTTTCGGCCTCACTTCATGTATTCATAAACGTTGAAAGCTGGGGCT-T-GT 958
Query 979 TTCCTTTTATAACCGAGAACCAACGATTGCGGATTCAATGGCTTTGTTAGCAACATTATT 1038
|||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||| |
Sbjct 959 TTCCTTTTATAACCGAGAACCAACCATTGCGGACTCAATGGCTTTATTAGCAGCATTACT 1018
Query 1039 GAACTACATAACTCAAAATCACAATTCAACATAAGAAGATAA 1080
|||||||| |||| ||||||||||||| |||||||| |||||
Sbjct 1019 GAACTACAAAACTAAAAATCACAATTCCACATAAGAGGATAA 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5