BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15310.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480400 jgi|Araly1|480400|fgenesh2_kg.3__3101__AT2G15310.1 1454 0.0
> Ahg480400 jgi|Araly1|480400|fgenesh2_kg.3__3101__AT2G15310.1
Length=1018
Score = 1454 bits (787), Expect = 0.0
Identities = 949/1025 (93%), Gaps = 20/1025 (2%)
Strand=Plus/Plus
Query 4 TCTGCAAATCAAACTTTCAGTTATTTTTTC-TTTTCTCTCATGTGTGTAAAATACTCTTC 62
|||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 1 TCTGAAAATCAAACTTTCAGTTA-TTTTTCATTTTTTCTCATGTGTGTAAAATACTCTTC 59
Query 63 ATAGATCTCATATAAGTCCAAGCTTGAATTGAAATATCAGAAGCTGTGTTTCTTTCACTG 122
| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||
Sbjct 60 ACAGATCTCATATAAGCCCAAGCTTGAATTGAAATATCA-AAGCAGTGTTTCTTTCACTA 118
Query 123 TATCTAAGA-TCCTTGtttttgttttttGTTCTACATGGGAGCCAGATTTTCACGTATAG 181
||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 119 TATCTCAGATTCCTTGTTTTTG-TTTTTGTTCTACATGGGAGCCAGATTTTCGCGTATAG 177
Query 182 CGAAAAGGTTTCTTCCTAAAAGTAAAGTAAGGATTTTGATGGTTGGTCTTGATGGTTCAG 241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 178 CGAAAAGGTTTCTTCCTAAAAGTAAAGTAAGGATTTTGATGGTGGGTCTTGATGGTTCAG 237
Query 242 GGAAGACTACCATCCTTTACAAGTTGAAGCTTGGAGAAGTTGTCACAACAGTGCCTACTA 301
||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 238 GGAAGACTACCATTCTTTACAAGCTGAAGCTTGGAGAGGTTGTCACAACAGTGCCTACTA 297
Query 302 TTGGTTTCAACCTCGAGACAGTAGAATACAAAGGCATCAATTTCACTGTATGGGATATAG 361
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCGGGTTCAACCTCGAGACAGTAGAATACAAAGGCATCAATTTCACTGTATGGGATATAG 357
Query 362 GAGGACAAGAGAAGATTCGCAAATTGTGGAGACACTATTTCCAGAACGCGCAGGGGCTCA 421
||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |
Sbjct 358 GAGGACAAGAGAAGATTCGTAAACTGTGGAGACACTATTTCCAGAACGCACAGGGGCTTA 417
Query 422 TCTTTGTAGTGGACAGCAGCGATAGTGAAAGGTTATCAGAAGCTCGAAACGAGCTGCATC 481
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 418 TCTTTGTGGTGGACAGCAGTGATAGTGAAAGGATATCAGAAGCTCGAAACGAGCTGCATC 477
Query 482 GCATACTAACCGATAATGAACTAGAAGGTGCATGTGTACTTGTCTTTGCGAACAAGCAAG 541
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 478 GCATACTAACCGATAATGAACTAGAAGGTGCATGTGTACTCGTCTTTGCGAACAAGCAAG 537
Query 542 ATTCGAGAAATGCTTTACCTGTAGCCGAGGTTGCCAACAAACTTGGTCTACACAGCCTAT 601
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATTCAAGAAATGCTTTACCCGTAGCCGAGGTTGCCAACAAACTTGGTCTACACAGCCTAT 597
Query 602 CCAAACGTTGTTGGCTTATACAAGGAACCTCAGCTATCTCTGGGCAAGGATTATACGAAG 661
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 598 CCAAACGTTGTTGGCTTATACAAGTAACCTCAGCCATCTCTGGGCAAGGATTATACGAAG 657
Query 662 GACTTGAGTGGCTATCGACAACAATCCCCAACAAACCCGAACGGTCTACTTCGGTTAGTA 721
||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 658 GACTTGAATGGCTATCCACAACAATCCCGATCAAACCCGAACGGTCTACTTCGGTTGGTA 717
Query 722 GTTTCCGGAGTGATTCCTATGAGAGGAAGCTGGTCCGAGGTCCGAGGTATTAAAAG---G 778
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 718 GTTTCCGGAACAATTCCTATGAGAGGAAGCTGGTACGAGGTCCGAGGTATTAAAAGTCTG 777
Query 779 ----CTTTAAAT-GGTTACTCCAACGTAAAAAACAGAACGCACCAGAA-AGGGCAAGTGT 832
|||| ||| ||||| ||||| ||| ||||| ||||| |||| || | |||||||
Sbjct 778 AAGGCTTTGAATTGGTTATTCCAATGTAGAAAACGGAACGTACCA-AATATCACAAGTGT 836
Query 833 ATTTTTGTACTAGCTTGTTTGGTATACGCTCTGATTCGTACGAGCAACCAAAATAGCTCT 892
||||||||||||||||||||||| || | | | || |||||||||||||||||||||||
Sbjct 837 GTTTTTGTACTAGCTTGTTTGGTACACTC-CGG-TTGGTACGAGCAACCAAAATAGCTCT 894
Query 893 CTTCTGCGTTCTAT--ATTTGTATGATTATGTTGTTTTGTTTTCAATGTTTCTCATTGAG 950
||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 895 CTTCTTCGTTCTATGTATTTGTATGATTATGGCGTTTTGTTTTCAATGTTTCTCAATGAG 954
Query 951 AACCATATTTGACTATTACTCATATTATGGTGTGAATAAGGTTTTCTAGGGTATATATCT 1010
||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 955 AACCATACTTGACTATTACTCATATTATTGAGTGAATAAGGTTTT-TAGGGTATATATCT 1013
Query 1011 TTACG 1015
|||||
Sbjct 1014 TTACG 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5