BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15320.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931262 jgi|Araly1|931262|scaffold_303719.1 1871 0.0
> Ahg931262 jgi|Araly1|931262|scaffold_303719.1
Length=1207
Score = 1871 bits (1013), Expect = 0.0
Identities = 1118/1168 (96%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 37 Gccttctt-ct-t-cttctcctcctcctcctcttctcctctgccgact-ctctGACGTCA 92
|||||||| || | || ||||||||| ||||||||||||| ||||| | ||||||| |||
Sbjct 43 GCCTTCTTCCTCTCCTCCTCCTCCTCTTCCTCTTCTCCTCCGCCGA-TACTCTGACTTCA 101
Query 93 CCATCCGACGTGTCAGCTTTAAAAGCTTTCAAAGCCACCGTGAAACCCAACTCAATCCCA 152
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 102 CCATCCGACGTGTCAGCTTTAAAAGCTTTCAAAGCCACCGTGAAACCAAACTCAATCCCA 161
Query 153 CCGTGGTCTTGTCTCGCTAGCTGGGACTTTACTGTCTCCGACCCATGTGCTTCACCACGT 212
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CCGTGGTCTTGTCTTGCAAGCTGGGACTTTACTGTCTCCGACCCATGTGCTTCACCACGT 221
Query 213 CGAACACATTTCACTTGCGGCATCACTTGCTCGTCTGACTCCACACGTGTGACCCAACTC 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CGAACACATTTCACTTGCGGCATCACTTGCTCGTCTGACTCCACACGTGTGACCCAACTC 281
Query 273 ACTCTCGACCCAGCCGGGTACACGGGTCGTCTCACGCCTCTCATCTCCGGCCTCACAGAG 332
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 282 ACTCTCGACCCGGCCGGCTACACGGGTCGTCTCACGCCTCTTATCTCCGGCCTCACAGAG 341
Query 333 CTTCTCACGCTCGATCTCGCCGAGAACAACTTCTACGGCCTAATCCCATCCTCCATCTCC 392
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 342 CTTCTCACGCTCGATCTCGCCGAGAACAACTTCTACGGTCTAATCCCATCCTCCATCTCC 401
Query 393 TCCCTC-ACCAGCCTCAAGACCTTGATCCTCCGATCCAACTCGTTTTCCGGGTCATTACC 451
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 402 TCCCTCCAC-AGCCTCAAGACCTTGATCCTCCGGTCCAACTCGTTTTCCGGGTCATTACC 460
Query 452 CGACTCAGTAACTCGACTCAACTCACTCGAATCCATTGACATATCTCACAACTCTCTCAC 511
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 461 CGACTCAGTAACTCGACTCAACTCACTCGAATCCATTGACATATCTCACAACTCACTCAC 520
Query 512 CGGGCCGCTTCCAAAAACAATGAACTCGCTTTCAAATCTCCGACAACTCGATCTTAGCTA 571
|||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 521 CGGGCCGCTTCCCAAAACAATGAACTCGCTCTCCAATCTCCGACAGCTCGATCTTAGCTA 580
Query 572 CAACAAGCTCACCGGAGCCATCCCAAAGCTTCCGAAAAACCTCATCGATTTAGCTTTAAA 631
|||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 581 CAACAAACTCACCGGAGCCATCCCAAAGCTTCCGAGAAACCTCATCGACTTAGCTTTAAA 640
Query 632 GGCGAATACTTTATCAGGACCCATCTCAAAAGACTCATTCACCGAGTCAACTCAGCTCGA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 641 GGCGAATACTTTATCAGGACCCATCTCAAAAGACTCATTCACCGAGTCAACTCAGCTAGA 700
Query 692 AATCGTCGAAATCGCTGAGAACTCATTCACCGGAACACTCGGAGCTTGGTTCTTCCTACT 751
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 701 AATCGTCGAACTCGCTGAGAACTCATTCACCGGAACTCTCGGAGCTTGGTTCTTCTTACT 760
Query 752 TGAATCAATCCAACAAGTCGATCTAGCGAACAACACTCTCACAGGCATCGAAGTCCTCCC 811
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CGAATCAATCCAACAAGTAGATCTAGCGAACAACACTCTCACAGGCATCGAAGTCCTCCC 820
Query 812 TCCAAACCTCGCCGGAGAAAACAACCTCGTAGCTGTAGAGCTAGGATTCAACCAAATCAG 871
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 821 TCCAAAACTCGCCGGAGAAAACAACCTAGTAGCTGTAGAGCTAGGATTCAACCAAATCAG 880
Query 872 AGGAAACGCTCCGGCGAGTTTCGCGGCGTATCCAAGACTTTCTTCACTATCTATGAGATA 931
|||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 881 AGGAAACGCTCCGGCGAGTTTCGCGGCGTACCCGAGACTTTCGTCACTGTCTATGAGATA 940
Query 932 CAACGTGCTTCACGGTGTTATACCGTCGGAATACGAACGGAGCAAGACATTAAGACGGCT 991
|||| ||||||||||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 941 CAACATGCTTCACGGTGTGATTCCGTCGGAATACGAACGGAGCAAGACGTTGAGACGGCT 1000
Query 992 TTACTTAGACGGGAACTTCTTGACGGGAAAACCTCCGGCGAGATTTGTGAGAAC-AGACG 1050
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1001 TTACTTAGACGGAAACTTCTTGACGGGAAAACCTCCGGCGAGATTTGTGA-AACCAGACG 1059
Query 1051 CAGAAGTAATGGGAAGTTTGGGGAATAATTGTCTACAGGGATGTCCAGGGAAAGCTAAGA 1110
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1060 CAGAAGTTATGGGAAGTTTGGGGAATAATTGTCTACGGGGATGTCCAGGGAAAGCTAAGA 1119
Query 1111 TGTGTGCTCCATCGCAGAAACCATTTTACATTTGTAAGCAAGCTTATGGTGGAAAACCAA 1170
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TGTGTGCTCCGTCGCAGAAACCATTTTACATTTGTAAGCAAGCTTATGGTGGAAAACCAA 1179
Query 1171 AGTCTTAGTTTTGTCGGTGTCGGTGACT 1198
||||||||||||||||||||||||||||
Sbjct 1180 AGTCTTAGTTTTGTCGGTGTCGGTGACT 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5