BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G15340.1

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480402 jgi|Araly1|480402|fgenesh2_kg.3__3103__AT2G15340.1         322    2e-87


> Ahg480402 jgi|Araly1|480402|fgenesh2_kg.3__3103__AT2G15340.1
Length=410

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 215/234 (92%), Gaps = 5/234 (2%)
 Strand=Plus/Plus

Query  9    CTTTGTTCTATAATTAAACAAA-ACTCATAAGAAGAAGAAAAACGATGGCTCTCTCTGGT  67
            |||||||||||||||||||||| || |||||||| || |||||| |||||||||||||||
Sbjct  1    CTTTGTTCTATAATTAAACAAACACACATAAGAAAAACAAAAACTATGGCTCTCTCTGGT  60

Query  68   TCGCAAAAGAAGGTTTTCCTACTTGTTATAGCCATTGCATGTCTCTCCTCTTCTCT-TGC  126
            |||||||||||| |||| ||||||||| |||||||||||||||||||||||||| | |||
Sbjct  61   TCGCAAAAGAAGTTTTTTCTACTTGTTCTAGCCATTGCATGTCTCTCCTCTTCT-TGTGC  119

Query  127  AGAGGCGTGGAGCTGGAGTTCTAGTGACGGCAACGGCTGGGGATGGGGATCTGATGGCTC  186
            ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct  120  AGAGGCGTGGAGCTGGAGTTCGAGTAACGGCAACGGTTGGGGATGGGGATCTGATGGCTC  179

Query  187  TAGCACCTCTACCTCAGGCCCAGGTTCAA-CTCCTGGTGATTCAAACTCTGGCG  239
            |||||||||||||||||| || ||||||| | | ||| ||||||||||||||||
Sbjct  180  TAGCACCTCTACCTCAGGTCCTGGTTCAAACAC-TGGCGATTCAAACTCTGGCG  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19421194801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5