BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15345.1
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931265 jgi|Araly1|931265|scaffold_303722.1 556 5e-158
> Ahg931265 jgi|Araly1|931265|scaffold_303722.1
Length=604
Score = 556 bits (301), Expect = 5e-158
Identities = 494/585 (84%), Gaps = 22/585 (4%)
Strand=Plus/Plus
Query 1 TTGTCTCATAAGAAATGTATTTTCAATTCTTCCTCTTCTCGTTATTCTATCAATCACCCC 60
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 TTGTGTCATAAGACATATATTTTCAATTCTTCCTCTTCTCGTTATTCTATCAATCACCCC 91
Query 61 TGCGTCTTCATCATTATTGTCTTTGTCTCCAAATGACAAAATTAGAAAAGATTTAGTCAA 120
| ||||||||| ||| | || | | |||||||||||| | |||||| ||| ||||
Sbjct 92 TTTGTCTTCATC-TTA-T-TC----TAT--AAATGACAAAATCACAAAAGAATTAATCAA 142
Query 121 CCAACTCTGCTCACAACCGACAATTTCCAAGCAGTTCTGTCTCGCTTGGCTAACCTCTTT 180
|||||||||||||||||||||||||| ||| || |||||| |||||||| |||||||| |
Sbjct 143 CCAACTCTGCTCACAACCGACAATTTACAACCATTTCTGTGTCGCTTGGGTAACCTCTGT 202
Query 181 CCCA-AACACGTTCACCCTTGACATGCAAGGTCTTGTCAATATGGTCTATCAACAGACGG 239
| || || ||||||| ||||||| |||||||||||||| || || |||||||| ||||||
Sbjct 203 CGCACAA-ACGTTCAACCTTGACCTGCAAGGTCTTGTCTATCTGCTCTATCAAAAGACGG 261
Query 240 AACGGTTGGGCTATAAGAACCTAGAGATGATTAAAGGCTTAGATAGAACCGAGAATTATT 299
|| |||||||| ||||||||||||||||||||||| |||||| |||||||||| | |
Sbjct 262 AATTGTTGGGCTCTAAGAACCTAGAGATGATTAAAGACTTAGAGAGAACCGAGACTGAGC 321
Query 300 CGAAGCTCAAGA-AGTATTATAGGTCTTGCGTGAAAGAATATGAATTATCCAATAAG-GC 357
| |||||||||| | ||| ||||||| |||||||||||||||||||| ||| || ||
Sbjct 322 CAAAGCTCAAGATCCCA-TATGGGTCTTGTGTGAAAGAATATGAATTATCGAAT-AGAGC 379
Query 358 GATCGAGGAAGCTAAAGGGTTTGC-A-----AGCTCTAAGGCGTACCGGTCAGCTTCTGA 411
|||||||||||||||| |||||| | | ||| ||||| |||| |||||| ||| |
Sbjct 380 AATCGAGGAAGCTAAAGAGTTTGCGAGTGCGAACTCGAAGGCATACCTGTCAGCATCTAA 439
Query 412 GGCGGCTGCTAGAGCCTTTGATAGTATATCTATGTGCGAAGCTTATCTTGAAGGAAGCAA 471
||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 440 GGCGGCTTCTAGAGCCTTCGATAGTATATCTATGTGCGAAGCTTATCTTGAAGGACTCAA 499
Query 472 AACCCCGGGTTATGTCACGACACGCAACTGGTGGTTTGAAAGAATGTGTGACATTGACAA 531
| |||| | ||||| |||||||||| | |||||||||| |||||||| ||||||||||
Sbjct 500 ATTGCCGGATCATGTCTCGACACGCAATTTGTGGTTTGAAGGAATGTGTAACATTGACAA 559
Query 532 AATATTCACCGACCTTTTGATTTC-TGCTAAGTTTTAATTTACAT 575
||| ||| |||||||||| |||| | || ||||| ||||||||
Sbjct 560 AATTTTCTCCGACCTTTTAATTTGATTCTGTGTTTTTATTTACAT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24169929378
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5