BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15400.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343130 jgi|Araly1|343130|fgenesh1_pg.C_scaffold_3002893 1424 0.0
Ahg480409 jgi|Araly1|480409|fgenesh2_kg.3__3110__AT2G15430.1 1387 0.0
> Ahg343130 jgi|Araly1|343130|fgenesh1_pg.C_scaffold_3002893
Length=960
Score = 1424 bits (771), Expect = 0.0
Identities = 898/961 (93%), Gaps = 2/961 (0%)
Strand=Plus/Plus
Query 87 ATGGACGGTGTCACCTACCAAAGATTCCCAACGGTGAAGATCCGTGAGCTTAAAGATGAC 146
||||||||| ||| |||||||||||||||| | | || |||||||||||||||||||||
Sbjct 1 ATGGACGGTACCACTTACCAAAGATTCCCAAAGATCAATATCCGTGAGCTTAAAGATGAC 60
Query 147 TACGCCAAGTTCGAGCTTCGTGAAACCGACGTTTCAATGGCCAACGCTCTCCGTCGCGTA 206
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACGCCAAGTTCGAGCTTCGCGAAACCGACGTTTCAATGGCCAACGCTCTCCGTCGCGTA 120
Query 207 ATGATCTCCGAAGTCCCCACCATGGCAATCCATCTCGTCAAAATCGAGGTTAATTCCTCT 266
||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 121 ATGATCTCCGAAGTCCCCACCATCGCAATAGATCTCGTCAACATCGAGGTTAATTCCTCT 180
Query 267 GTTCTCAACGACGAGTTCATTGCTCAACGACTTAGTCTCATCCCTCTCACTAGCGAGCGT 326
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GTTCTCAACGACGAGTTCATTGCTCAACGACTTGGTCTCATCCCTCTCACTAGCGAGCGT 240
Query 327 GCTATGAGCATGCGGTTCTGTCAAGATTGTGAAGATTGTAATGGAGATGAACATTGCGAG 386
|||||||||||||||||||||||||||||||| | |||| ||||||| | ||| ||||||
Sbjct 241 GCTATGAGCATGCGGTTCTGTCAAGATTGTGATGCTTGTGATGGAGAAGGACAATGCGAG 300
Query 387 TTCTGCTCTGTTGAGTTTCCCCTTAGTGCTAAGTGTGTTACTGACCAAACCCTAGATGTT 446
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTTGCTCTGTTGAGTTTCGGCTTAGTGCTAAGTGTGTTACTGACCAAACCCTAGATGTT 360
Query 447 ACTAGTAGGGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTAGTAAC 506
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 361 ACTAGTAGAGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTATTGAC 420
Query 507 TCATCTACTTCTGATTCAAGCGAGCACAAGGGAATTATCATTGCGAAACTACGCAGGGGA 566
|| ||| ||||||||||||||||||| |||||||||| ||||| |||||| |||||||||
Sbjct 421 TCGTCTGCTTCTGATTCAAGCGAGCAAAAGGGAATTACCATTGTGAAACTGCGCAGGGGA 480
Query 567 CAAGAGTTGAAGCTTAAAGC-ATTAGCTAGGAAAGGAATTGGGAAAGATCATGCGAAATG 625
||||||||||||||||| || || ||| |||||||||||||||||||||||||| |||||
Sbjct 481 CAAGAGTTGAAGCTTAAGGCGAT-AGCGAGGAAAGGAATTGGGAAAGATCATGCAAAATG 539
Query 626 GTCTCCTGCAGCTACTGTTACGTATATGTATGAGCCTGACATTATTATCAATGAAGAGAT 685
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 540 GTCTCCTGCAGCTACTGTTACGTTTATGTATGAGCCTGACATTATTATCAATGAAGACTT 599
Query 686 GATGAACACTTTGACAGATGAGGAAAAAATTGACTTGATTGAGAGCAGTCCTACCAAAGT 745
|||| ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 600 GATGGACACTTTGACAGACGAGGAGAAAATAGACTTGATTGAGAGCAGTCCAACCAAAGT 659
Query 746 GTTTGGCATTGACCCAGTCACCGGACAGGTTGTGGTGGTTGATCCTGAAGCATACACTTA 805
||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 660 TTTTGGCATTGATCCAGTCACCAGACAGGTTGTGGTCGTTGATCCTGAAGCATACACTTA 719
Query 806 CGATGAAGAAGTGATCAAGAAAGCTGAAGCAATGGGGAAACCGGGACTCATTGAGATCCA 865
|||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||| |
Sbjct 720 CGATGAAGAAGTGATCAAGAAAGCAGAAGCCATGGGAAAACCAGGACTCATTGAGATCTA 779
Query 866 TCCGAAACATGATAGTTTTGTATTCACTGTTGAGTCCACAGGTGCATTGAAGGCTTCTCA 925
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 780 TCCGAAAGATGATAGTTTTGTATTCACTGTTGAGTCCACAGGTGCACTGAAGGCTTCCCA 839
Query 926 GCTGGTACTAAATGCCATTGATATCCTGAAGCAGAAGCTTGATGCAATCCGTCTCTCAGA 985
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct 840 GCTGGTACTAAATGCCATAGACATCCTGAAGCAGAAGCTTGATGCAATCTGTCTCTCAGA 899
Query 986 TAACACTGTAGAAGCCGATGATCAGTTTGGTGAACTCGGTGCCCATATGCGTGAAGGATG 1045
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 900 TGACACTGTAGAAGCTGATGATCAGTTTGGTGAACTCAGTGCCCATATGCGTGGAGGATG 959
Query 1046 A 1046
|
Sbjct 960 A 960
> Ahg480409 jgi|Araly1|480409|fgenesh2_kg.3__3110__AT2G15430.1
Length=1058
Score = 1387 bits (751), Expect = 0.0
Identities = 958/1056 (91%), Gaps = 22/1056 (2%)
Strand=Plus/Plus
Query 11 TCTTCTTCTCCGGCGAAGAAATCGAAAAGTCATTA-CCCT--AA---GAGT----C-CCA 59
|||||||||||||||||||||| |||||||||||| |||| || | | | | |
Sbjct 2 TCTTCTTCTCCGGCGAAGAAATTGAAAAGTCATTATCCCTAAAACCCTAATAAAGCTCAA 61
Query 60 GAGTCGTCAG--A--A-GGAACAGCTTTTGAAATGGACGGTGTCACCTACCAAAGATTCC 114
| ||||||| | | || |||||| || ||||||||||| ||| |||||||||||||
Sbjct 62 CACTCGTCAGAAACCACCGAGCAGCTTCTGCAATGGACGGTGCCACATACCAAAGATTCC 121
Query 115 CAACGGTGAAGATCCGTGAGCTTAAAGATGACTACGCCAAGTTCGAGCTTCGTGAAACCG 174
||| | | | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 122 CAAAGATCACGATCCGTGAGCTTAAAGATGACTACGCCAAGTTCGAGCTTCGCGAAACCG 181
Query 175 ACGTTTCAATGGCCAACGCTCTCCGTCGCGTAATGATCTCCGAAGTCCCCACCATGGCAA 234
|||| || ||||||||||||||||||||||| ||||||||||||||||| || | ||||
Sbjct 182 ACGTATCCATGGCCAACGCTCTCCGTCGCGTTATGATCTCCGAAGTCCCAACTGTAGCAA 241
Query 235 TCCATCTCGTCAAAATCGAGGTTAATTCCTCTGTTCTCAACGACGAGTTCATTGCTCAAC 294
| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 242 TAGATCTCGTCGAAATCGAAGTTAATTCGTCTGTTCTCAACGACGAGTTCATTGCTCATC 301
Query 295 GACTTA-GTCTCATCCCTCTCACTAGCGAGCGTGCTATGAGCATGCGGTTCTGTCAAGAT 353
|| ||| ||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 302 GA-TTAGGTCTCATTCCTCTCACTAGCGAGCGTGCTATGAGCATGCGGTTCTCTCGAGAT 360
Query 354 TGTGAAGATTGTAATGGAGATGAACATTGCGAGTTCTGCTCTGTTGAGTTTCCCCTTAGT 413
||||| | |||| ||||||||| ||| |||||||| |||||||||||||||| ||||||
Sbjct 361 TGTGATGCTTGTGATGGAGATGGACAATGCGAGTTTTGCTCTGTTGAGTTTCGGCTTAGT 420
Query 414 GCTAAGTGTGTTACTGACCAAACCCTAGATGTTACTAGTAGGGATCTCTACAGTGCTGAT 473
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 421 GCTAAGTGTGTTACTGACCAAACCCTAGATGTTACTAGTCGGGATTTGTACAGTGCTGAT 480
Query 474 CCTACTGTTACTCCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCAC 533
|||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 481 CCTACTGTTACTCCTGTTGATTTCACTATTGACTCGTCTGCTTCTGATTCAAGCGAGCAA 540
Query 534 AAGGGAATTATCATTGCGAAACTACG-CAGGGGACAAGAGTTGAAGCTTAAAGC-ATTAG 591
|||||||||||||||| |||||| || | ||||||||||||||||||||| || | |||
Sbjct 541 AAGGGAATTATCATTGTGAAACTGCGTC-GGGGACAAGAGTTGAAGCTTAGGGCGA-TAG 598
Query 592 CTAGGAAAGGAATTGGGAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTATA 651
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 CGAGGAAAGGGATTGGAAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTTTA 658
Query 652 TGTATGAGCCTGACATTATTATCAATGAAGAGATGATGAACACTTTGACAGATGAGGAAA 711
|||||||||||||||| |||||||||||||| |||||| |||||||| |||| |||||||
Sbjct 659 TGTATGAGCCTGACATAATTATCAATGAAGATATGATGGACACTTTGTCAGACGAGGAAA 718
Query 712 AAATTGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATTGACCCAGTCACCGGAC 771
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 AAATCGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATTGACCCAGTCACCAGAC 778
Query 772 AGGTTGTGGTGGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCTG 831
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGGTTGTGGTCGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCTG 838
Query 832 AAGCAATGGGGAAACCGGGACTCATTGAGATCCATCCGAAACATGATAGTTTTGTATTCA 891
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 839 AAGCAATGGGGAAACCGGGACTCATTGAGATCCATCCGAAAGATGATAGTTTTATATTCA 898
Query 892 CTGTTGAGTCCACAGGTGCATTGAAGGCTTCTCAGCTGGTACTAAATGCCATTGATATCC 951
||||||| |||||||||||| |||||||||| |||||||| |||||||| || |||||||
Sbjct 899 CTGTTGAATCCACAGGTGCAGTGAAGGCTTCCCAGCTGGTGCTAAATGCGATAGATATCC 958
Query 952 TGAAGCAGAAGCTTGATGCAATCCGTCTCTCAGATAACACTGTAGAAGCCGATGATCAGT 1011
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 959 TGAAGCAGAAGCTTGATGCAGTCCGTCTCTCAGATGACACTGTAGAAGCCGATGATCAGT 1018
Query 1012 TTGGTGAACTCGGTGCCCATATGCGTGAAGGATGAA 1047
||||||||||||||||||||||||||| ||||||||
Sbjct 1019 TTGGTGAACTCGGTGCCCATATGCGTGGAGGATGAA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5