BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15430.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480409 jgi|Araly1|480409|fgenesh2_kg.3__3110__AT2G15430.1 1657 0.0
Ahg343130 jgi|Araly1|343130|fgenesh1_pg.C_scaffold_3002893 1380 0.0
> Ahg480409 jgi|Araly1|480409|fgenesh2_kg.3__3110__AT2G15430.1
Length=1058
Score = 1657 bits (897), Expect = 0.0
Identities = 1008/1062 (95%), Gaps = 6/1062 (1%)
Strand=Plus/Plus
Query 1 ATCTCCTTCTCCGGCGAAGAAATTGAAAATTCATTATCCCTAAAACCCTAATAAAGGTCC 60
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1 ATCTTCTTCTCCGGCGAAGAAATTGAAAAGTCATTATCCCTAAAACCCTAATAAAGCT-C 59
Query 61 AGAGAGTCGTCAGAAACCACCGATTAGCTTTTGAAATGGACGGTGCCACATACCAAAGAT 120
| | | ||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 60 A-ACACTCGTCAGAAACCACCGAGCAGCTTCTGCAATGGACGGTGCCACATACCAAAGAT 118
Query 121 TCCCAAAGATCAAGATCCGTGAGCTTAAAGATGATTACGCCAAGTTCGAGCTTCGTGAAA 180
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 119 TCCCAAAGATCACGATCCGTGAGCTTAAAGATGACTACGCCAAGTTCGAGCTTCGCGAAA 178
Query 181 CCGACGTTTCTATGGCCAACGCTCTCCGTCGCGTAATGATCTCCGAAGTCCCTACCGTCG 240
||||||| || ||||||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 179 CCGACGTATCCATGGCCAACGCTCTCCGTCGCGTTATGATCTCCGAAGTCCCAACTGTAG 238
Query 241 CAATAGATCTAGTCGAAATCGAGGTTAATTCATCTGTACTCAACGACGAGTTCATTGCTC 300
|||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 239 CAATAGATCTCGTCGAAATCGAAGTTAATTCGTCTGTTCTCAACGACGAGTTCATTGCTC 298
Query 301 ATCGATTAGGTCTCATTCCTCTCACTAGCGAACGTGCTATGAGCATGCGTTTCTCTCGAG 360
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 299 ATCGATTAGGTCTCATTCCTCTCACTAGCGAGCGTGCTATGAGCATGCGGTTCTCTCGAG 358
Query 361 ATTGTGATGCTTGTGATGGAGATGGACAATGCGAGTTTTGCTCTGTTGAGTTTCGGCTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATTGTGATGCTTGTGATGGAGATGGACAATGCGAGTTTTGCTCTGTTGAGTTTCGGCTTA 418
Query 421 GTTCTAAGTGTGTTACTGATCAAACCCTAGATGTTACTAGTAGGGATTTGTACAGTGCTG 480
|| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 GTGCTAAGTGTGTTACTGACCAAACCCTAGATGTTACTAGTCGGGATTTGTACAGTGCTG 478
Query 481 ATCCTACTGTTACTCCTGTGGATTTCACTATTGACTCGTCTG-TATCTGATTCAAGCGAG 539
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 479 ATCCTACTGTTACTCCTGTTGATTTCACTATTGACTCGTCTGCT-TCTGATTCAAGCGAG 537
Query 540 CACAAGGGAATTATCATTGTGAAACTGCGTCGGGGACAAGAGTTGAAGCTTAGAGCGATA 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 CAAAAGGGAATTATCATTGTGAAACTGCGTCGGGGACAAGAGTTGAAGCTTAGGGCGATA 597
Query 600 GCGAGGAAAGGGATTGGGAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTTT 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCGAGGAAAGGGATTGGAAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTTT 657
Query 660 ATGTATGAGCCTGACATAATTATTAATGAAGATATGATGGATACTTTGTCAGACGAGGAA 719
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 658 ATGTATGAGCCTGACATAATTATCAATGAAGATATGATGGACACTTTGTCAGACGAGGAA 717
Query 720 AAGATCGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATGGATCCAGTCACCAGA 779
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 718 AAAATCGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATTGACCCAGTCACCAGA 777
Query 780 CAGGTTGTAGTGGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCT 839
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CAGGTTGTGGTCGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCT 837
Query 840 GAAGCAATGGGGAAACCGGGACTCATTGAGATC-AGTCCGAAAGATGACAGTTTTATATT 898
||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 838 GAAGCAATGGGGAAACCGGGACTCATTGAGATCCA-TCCGAAAGATGATAGTTTTATATT 896
Query 899 CACTGTTGAGTCCACAGGTGCAGTGAAGGCTTCCCAACTGGTACTAAATGCCATTGATCT 958
||||||||| |||||||||||||||||||||||||| ||||| |||||||| || ||| |
Sbjct 897 CACTGTTGAATCCACAGGTGCAGTGAAGGCTTCCCAGCTGGTGCTAAATGCGATAGATAT 956
Query 959 TCTGAAGCAGAAGCTTGATGCAGTCCGTCTCTCAGATGACACCGTAGAAGCGGATGATCA 1018
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 957 CCTGAAGCAGAAGCTTGATGCAGTCCGTCTCTCAGATGACACTGTAGAAGCCGATGATCA 1016
Query 1019 GTTTGGTGAACTCGGTGCCCATATGCGTGGAGGATGAACTCA 1060
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTTTGGTGAACTCGGTGCCCATATGCGTGGAGGATGAACTCA 1058
> Ahg343130 jgi|Araly1|343130|fgenesh1_pg.C_scaffold_3002893
Length=960
Score = 1380 bits (747), Expect = 0.0
Identities = 898/969 (93%), Gaps = 18/969 (2%)
Strand=Plus/Plus
Query 96 ATGGACGGTGCCACATACCAAAGATTCCCAAAGATCAAGATCCGTGAGCTTAAAGATGAT 155
||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGACGGTACCACTTACCAAAGATTCCCAAAGATCAATATCCGTGAGCTTAAAGATGAC 60
Query 156 TACGCCAAGTTCGAGCTTCGTGAAACCGACGTTTCTATGGCCAACGCTCTCCGTCGCGTA 215
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TACGCCAAGTTCGAGCTTCGCGAAACCGACGTTTCAATGGCCAACGCTCTCCGTCGCGTA 120
Query 216 ATGATCTCCGAAGTCCCTACCGTCGCAATAGATCTAGTCGAA-ATCGAGGTTAATTCATC 274
||||||||||||||||| ||| ||||||||||||| ||| || |||||||||||||| ||
Sbjct 121 ATGATCTCCGAAGTCCCCACCATCGCAATAGATCTCGTC-AACATCGAGGTTAATTCCTC 179
Query 275 TGTACTCAACGACGAGTTCATTGCTCATCGA-TTAGGTCTCATTCCTCTCACTAGCGAAC 333
||| ||||||||||||||||||||||| ||| || |||||||| |||||||||||||| |
Sbjct 180 TGTTCTCAACGACGAGTTCATTGCTCAACGACTT-GGTCTCATCCCTCTCACTAGCGAGC 238
Query 334 GTGCTATGAGCATGCGTTTCTCTCGAGATTGTGATGCTTGTGATGGAGATGGACAATGCG 393
|||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||
Sbjct 239 GTGCTATGAGCATGCGGTTCTGTCAAGATTGTGATGCTTGTGATGGAGAAGGACAATGCG 298
Query 394 AGTTTTGCTCTGTTGAGTTTCGGCTTAGTTCTAAGTGTGTTACTGATCAAACCCTAGATG 453
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 299 AGTTTTGCTCTGTTGAGTTTCGGCTTAGTGCTAAGTGTGTTACTGACCAAACCCTAGATG 358
Query 454 TTACTAGTAGGGATTTGTACAGTGCTGATCCTACTGTTACTCCTGTGGATTTCACTATTG 513
|||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 TTACTAGTAGAGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTATTG 418
Query 514 ACTCGTCTG-TATCTGATTCAAGCGAGCACAAGGGAATTATCATTGTGAAACTGCGTC-G 571
||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||| | |
Sbjct 419 ACTCGTCTGCT-TCTGATTCAAGCGAGCAAAAGGGAATTACCATTGTGAAACTGCG-CAG 476
Query 572 GGGACAAGAGTTGAAGCTT-AGAGCGATAGCGAGGAAAGGGATTGGGAAAGATCATGCGA 630
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 477 GGGACAAGAGTTGAAGCTTAAG-GCGATAGCGAGGAAAGGAATTGGGAAAGATCATGCAA 535
Query 631 AATGGTCTCCTGCAGCTACTGTTACGTTTATGTATGAGCCTGACATAATTATTAATGAAG 690
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 536 AATGGTCTCCTGCAGCTACTGTTACGTTTATGTATGAGCCTGACATTATTATCAATGAAG 595
Query 691 A-TATGATGGATACTTTGTCAGACGAGGA-AAAGATCGACTTGATTGAGAGCAGTCCTAC 748
| | ||||||| |||||| |||||||||| ||| || |||||||||||||||||||| ||
Sbjct 596 ACT-TGATGGACACTTTGACAGACGAGGAGAAA-ATAGACTTGATTGAGAGCAGTCCAAC 653
Query 749 CAAAGTGTTTGGCATGGATCCAGTCACCAGACAGGTTGTAGTGGTTGATCCTGAAGCATA 808
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 654 CAAAGTTTTTGGCATTGATCCAGTCACCAGACAGGTTGTGGTCGTTGATCCTGAAGCATA 713
Query 809 CACTTACGATGAAGAAGTGATCAAGAAAGCTGAAGCAATGGGGAAACCGGGACTCATTGA 868
|||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 714 CACTTACGATGAAGAAGTGATCAAGAAAGCAGAAGCCATGGGAAAACCAGGACTCATTGA 773
Query 869 GATC-AGTCCGAAAGATGACAGTTTTATATTCACTGTTGAGTCCACAGGTGCAGTGAAGG 927
|||| | |||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 774 GATCTA-TCCGAAAGATGATAGTTTTGTATTCACTGTTGAGTCCACAGGTGCACTGAAGG 832
Query 928 CTTCCCAACTGGTACTAAATGCCATTGATCTTC-TGAAGCAGAAGCTTGATGCAGTCCGT 986
||||||| ||||||||||||||||| || | || |||||||||||||||||||| || ||
Sbjct 833 CTTCCCAGCTGGTACTAAATGCCATAGA-CATCCTGAAGCAGAAGCTTGATGCAATCTGT 891
Query 987 CTCTCAGATGACACCGTAGAAGCGGATGATCAGTTTGGTGAACTCGGTGCCCATATGCGT 1046
|||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 892 CTCTCAGATGACACTGTAGAAGCTGATGATCAGTTTGGTGAACTCAGTGCCCATATGCGT 951
Query 1047 GGAGGATGA 1055
|||||||||
Sbjct 952 GGAGGATGA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5