BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15440.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931271 jgi|Araly1|931271|scaffold_303728.1 1598 0.0
> Ahg931271 jgi|Araly1|931271|scaffold_303728.1
Length=1024
Score = 1598 bits (865), Expect = 0.0
Identities = 971/1020 (95%), Gaps = 16/1020 (2%)
Strand=Plus/Plus
Query 41 AAAAATAAAATGAAGAGCAACACAAACACTAATCTGATTCTCTTCCACCACCACTCTCCA 100
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 13 AAAAA-AAAATGAAGAGCAACACAAACACTAGTCTAATTCTCTTCCACCACCACTCTCCA 71
Query 101 CTAACTTCAAAATCACCCTCCGCCGTCGCCGCCGCGAATCACCACCGTttcttattcatc 160
||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 72 CTAACTTCAAAATCATCTTCCGCCGTCGCCGCCGCGAATCACCACCGCCTCTTATTCATC 131
Query 161 ttcttcctctctttcttcactctcctcttctctttctctctc-t-t-ctcctcctcaatc 217
|||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 132 TTCTTCATCTCTTTCTTCACTCTCCTCTTCTCTTTCTCTCTCTTCTCCTCCTCCTCAATC 191
Query 218 cactccaccacatcctctcactctctctcctcatctccctcctcctcctctctTCCACCA 277
|||||||||||| |||||||||||||||||||| | || | |||||||||||||||||
Sbjct 192 CACTCCACCACAACCTCTCACTCTCTCTCCTCA--T--CT-C-CCTCCTCTCTTCCACCA 245
Query 278 CCAGTCCTCGCCGCACTTCTCCACTACACTTCCTCATCACCACCAAACACATCTATGTCC 337
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 246 CCAGTCCTCGCCGCACTCCTCCACTACACTTCCTCATCACCACCAAACACATCAATGTCC 305
Query 338 TTTCTTGAACTCTCCACCATCTCCAACATCATTCACTCTCATGGCCCAGCTTGTAACCTC 397
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 306 TTTCTTGAACTCTCCACCATCTCCTCCATCATTCACTCTCATGGCCCAACTTGTAACCTC 365
Query 398 TTAATCTTTGGACTAACTCACGAATCTCTTCTCTGGAGATCTATCAACTTCCAAGGCCGT 457
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 366 TTAATCTTTGGACTAACTCACGAATCTCTTCTCTGGAGATCTATAAACTTCCAAGGCCGT 425
Query 458 ACT-GTTTTCGTTGATGAGAGTCCTTACTCTGTTTCTAAATTCGAACAGAGTAACCCTGG 516
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 A-TGGTTTTCGTTGATGAGAGTCCTTACTCTGTTTCTAAGTTCGAACAGAGTAACCCTGG 484
Query 517 AGTTGAAGCTTACGAGGTTGTTTACTCAACTAAAGTCTCTCAAGCTAAGAAGCTTCTTGG 576
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 485 AGTTGAAGCTTATGAGGTTGTTTACTCAACTAAAGTCTCTCAAGCTGGGAAGCTTCTTGG 544
Query 577 TTATTACAAGACCCGACCCGAGTGTAGACCCGTTCAGAATCTTTTGTTCTCTGATTGTAA 636
||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 545 TTATTACAAGACCCGACCCGAATGTCGACCCGCTCAGAATCTTTTGTTCTCTGATTGTAA 604
Query 637 ATTGGGTATTAACGATTTGCCTAATTTTGTTTATGAGATTGATTGGGATGTGATTTTGAT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ATTGGGTATTAACGATTTGCCTAATTTTGTTTATGAGATTGATTGGGATGTGATTTTGAT 664
Query 697 TGATGGGCCTCGTGGGTATGCTTCTGATTCTCCGGGAAGGATGGCTCCGATCTTTACTTC 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGATGGGCCTCGTGGGTATGCTTCTGATTCTCCGGGAAGGATGGCTCCGATCTTTACTTC 724
Query 757 TGCGGTTTTAGCAAAAAGTAAAGATTTTGGGACGAAGACGAAGAAGACTGATGTTCTTGT 816
||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 725 GGCGGTTTTAGCAAAAAGTAAAGATTTTGGGAAGAAGACGAAGA---CTGATGTTTTTGT 781
Query 817 ACATGAGTTTGGGAGAAAGATTGAGAGAGTGTACAGTGAGGAGTTTCTATGTGAAGAGAA 876
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 782 ACATGAGTTTGGGAGAAAGATTGAGAGAGTTTATAGTGAAGAGTTTCTATGTGAAGAGAA 841
Query 877 TTTGATTGAAGTGGTCGGAGATTTAGGGCATTTTGTTGTGGCGGCGGCGGAGGAAAGAGA 936
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 842 TTTGGTTGAAGTCGTCGGAGATTTAGGGCATTTTGTTGTGGCGGCGGCGGAGGAAAGGGA 901
Query 937 GAGTTATGGTGATGGGTTTTGTCGGAATTCGACGAGATTGTCGGAGAGTTTTACGGCGGT 996
||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 902 GAGTTTTGGTAATGGGTTTTGTCGGAATTCGACGAGATTGTCGGAGACTTTTACGGCGGT 961
Query 997 GAGTGGTGGCGATGAAGAAAAAGTTGGTGTTGATGATGAGTGAAAAGTGGGtttggtttt 1056
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 962 GAGTGGTGGCGATGAAGAAAAAGTTGGTGTTGATGATGAGTGAAA-GTGGGTTTGGTTTT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5