BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15560.1
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480415 jgi|Araly1|480415|fgenesh2_kg.3__3116__AT2G15560.1 2660 0.0
> Ahg480415 jgi|Araly1|480415|fgenesh2_kg.3__3116__AT2G15560.1
Length=1923
Score = 2660 bits (1440), Expect = 0.0
Identities = 1755/1903 (92%), Gaps = 37/1903 (2%)
Strand=Plus/Plus
Query 2 ATATGCTTTCTCTGGACAAACGCAAAAACTTTTGTAGAACCCTAAAAATTCCCAAAATCC 61
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1 ATATGCTTTCTCTGGACAAACGCAAAAACTTTTGAAGAACCCTAAAAA-TCCCAAAATCC 59
Query 62 GTCGGAGAAGAAGATCGAGAAGAATCAACAACTAATCTGAAGAATTTTCCAAATTCCGTC 121
| || |||||||||||||||||||||||| |||||||||||||||| | ||||||| ||
Sbjct 60 GCCGAAGAAGAAGATCGAGAAGAATCAACTACTAATCTGAAGAATTCGCGAAATTCCATC 119
Query 122 TTCGTATCGTCTACGAGATCCT-TA-TC--TCTCCCCTGAATCTGGAACCTTTGATGATA 177
||||||||||||||| | | || || ||| | | ||| ||| ||||||||||||
Sbjct 120 TTCGTATCGTCTACG-CCT-GTGTATTCAATCT-TCAAG-ATCCGGAGCCTTTGATGATA 175
Query 178 CA-AAACGCTATGTCAAGTTATTATAATCCATCAGCAGCAACAACTTTAGTCTCTATTGA 236
|| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 176 CACAAA-GCTATGTCAAGTTATTATAATCCAT---CAGCAACAGCTTTAGTCTCTATTGA 231
Query 237 TTCCGATGAACAAAGAAGAATCAAATACCTAGCGGATTTAAACATGATTGCAACACAAAG 296
||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||
Sbjct 232 TTCTGATGAACAAAGAAGAATCAAATATTTAGCAGATTTGAACATGATTGCAACACAGAG 291
Query 297 ACATTCTTCTACAGATGGTCCTATGGCCATTCTCTGGGATATGGAGAATTGTCCC-GTTC 355
||||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||
Sbjct 292 ACATTCTTCTACAGATGGTCCTATGGCTATTCTCTGGGATATGGAGAACTG-CCCTGTTC 350
Query 356 CTAGCGATGTACGTCCTGAAGATGTAGCTAGTAACATAAGAATGGCTATTCAGTTACATC 415
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 351 CTAGCGATGTACGTCCTGAAGATGTGGCTAGTAACATAAGAATGGCGATTCAGTTACATC 410
Query 416 CTGTGATATCCGGTCCCGTTGTTAACTTCTCGGCTTACGGGGATTTCAATGGTTTCCCTC 475
| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 411 CGGTGATATCCGGTCCGGTTGTTAACTTCTCGGCTTACGGAGATTTCAATGCTTTCCCTC 470
Query 476 GTCGGGTTCGAGAAGGTTGTCAAAGAACCGGTGTGAAGCTTATTGATGTACCAAATGGTA 535
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 471 GTCGGGTTCGAGAAGGTTGTCAAAGAACCGGTGTGAAGCTTGTTGATGTACCAAATGGTA 530
Query 536 GGAAAGATGCGTCGGATAAAGCGATTTTGATTGATATGTTCTTGTTTGTGCTTGATAATA 595
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 531 GGAAAGATGCATCTGATAAAGCGATTTTGATTGATATGTTCTTGTTTGTACTTGATAATA 590
Query 596 AGCCGCCTGCGACTATCGTTCTCGTATCGGGTGATGTTGATTTCGCGCCTGCGCTTCATA 655
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 591 AGCCGCCTGCGACTATTATTCTCGTATCGGGAGATGTTGATTTCGCGCCTGCGCTTCATA 650
Query 656 TATTGGGTCAGCGTGGGTATACTGTGATTCTTGTTATACCTTCTAGTGTGTATGTGAATT 715
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 651 TATTGGGTCAGCGTGGGTACACTGTGATTCTTGTTATACCTTCTAGTGTGTATGTGAACT 710
Query 716 CAGCTTTGTCTAATGCTGGTAAGTTTGTTTGGGATTGGCATAGTATTGTTCACGGTGAAG 775
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 711 CAGCTTTGTCTAATGCTGGGAGGTTTGTTTGGGATTGGCATAGTATTGTTCACGGTGAAG 770
Query 776 GCTTTGTGCCGCGATGTAAACCTCGTGTTGTTCCGTATCTTATGGGGTGTAATATTGGTG 835
|||||||||||| | |||||||||||||||| || |||||||||||||||||||| |||
Sbjct 771 GCTTTGTGCCGCTACGTAAACCTCGTGTTGTGCCATATCTTATGGGGTGTAATATCAGTG 830
Query 836 ATAACAGTAACATGGATGGTTTGAATGAAGATGAAACTATTCTCTATAGAGGTAACTGTT 895
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 831 ATAATAGTAACATGGATGGTATGAATGAAGATGAAACAATTCTCTATAGAGGTAACTGTT 890
Query 896 ATAGTAGTGATCCAAGAGAGTCTTCTTCCTTGATGGTTTCGCAGTTTCGTAATGAGTATA 955
|||||| | ||||||||| |||||||||||||||||| |||||| ||| |||||||
Sbjct 891 ATAGTA---ACCCAAGAGAG---TCTTCCTTGATGGTTTCGAAGTTTCATAACGAGTATA 944
Query 956 GTAGCGGTGTAATGTCGTGTTGGCCATCTAATTCAGGCGAGTCTATGGCATGTCCTCCTT 1015
||||| | | |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 945 GTAGCAGCGCAATGTCGTGTTGGCCATCTAATTCAGGCGAGTCTTTGGCATATCCTCCTC 1004
Query 1016 CAGGTCACCTTGAGTCCACCATGTGGGTAGCGCCGGGAGATTTAAACGGTTTGAAGGGGC 1075
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1005 CTGGTCACCTTGAGTCCACCATGTGGGTAGCGCCGGGAGATTTAAACGGTTTGAAGGGAC 1064
Query 1076 AGCTCGTGAAGCTGCTAGAGCTTTCAGGTGGATGTATTCCTCTTATGCGTGTTCCTTCTG 1135
|||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||
Sbjct 1065 AGCTTGTGAAGCTGCTAGAGCTCTCAGGTGGATGTATTCCTCTCAAGCGTATTCCTTCTG 1124
Query 1136 AATACCAACGGAAATTCAGTAAACCGCTTTTTGTATCGGATTATGGGGTGGC-CAAGCTT 1194
|||||||| |||| |||||||||||||||||||||||||| || |||||| | |||||||
Sbjct 1125 AATACCAAAGGAATTTCAGTAAACCGCTTTTTGTATCGGACTACGGGGTG-CACAAGCTT 1183
Query 1195 GTGGATCTGTTCAAAAAGATGAGTGATGTGATTGTAGTTGATGGTAAAGGCAACAAGAGA 1254
|||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 1184 GTGGATCTGTTCAAAAAGATGAGTGATGTGATTGCAGTGGATAGTAAAGGCAACAAGAGA 1243
Query 1255 TTTGTTTACCTGCGCAACTCGAAACCGAACATTATCTCTCCTTCTTCCCCTGTGGTTCTA 1314
||||||||||||||||||| ||||||||| | |||||||| ||| ||||||||||||||
Sbjct 1244 ATTGTTTACCTGCGCAACTCCAAACCGAACGTCATCTCTCCGTCTCCCCCTGTGGTTCTA 1303
Query 1315 CTGAGAAGAGAGAGGAAAGGAAAAGAGCCTAACGGGGTAACTACCAATGGAGGAGTCTCC 1374
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1304 CTGAGAAGAGAGAAGAAAGGAAAAGCGCCTAACGGGGAAACTACCAATGGAGGAGTCTCC 1363
Query 1375 TCTGATGAAATGTCAGACACAGGCTCGGTTCAGAGCGAGAGGAACCTAGAAGAGTTCAAA 1434
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1364 TCTGATGAAATCTCAGACACGGGCTCGGTTCAGAGCGAGAGGAACCTCGAAGAGTTCAAA 1423
Query 1435 TTCGAGCTACAAGACATTTTGGTGAGCTATTGTTGTCAGGTACAGATGGATTGTTTCGAA 1494
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1424 TTCGAGCTACAAGACATTTTGGTGAGCTATTGTTGTGAGGTACAGATGGATTGTTTTGAG 1483
Query 1495 GCGATATACAAGCTAAGGTACAAAAGGCCATTGGCCTACACAAATATGGGCGTGAATCAC 1554
||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||
Sbjct 1484 GCGATATACAAGCTAAGGTACAAGAGGCCATTGCCCTACAAAAAGATGGGCGTGAATCAC 1543
Query 1555 TTGGAGCAGCTCTTTGACAAGTTAAGGGATGTTGTTGCCATACATGAAGATCCTGCTACA 1614
||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1544 TTGGAGCAGCTCTTTGACAAGTTCAGGGATGTTGTTGCCATATATGAAGATCCAGCTACA 1603
Query 1615 GGGAGGAAACTCATCAGCCCGGTTTAAAGGAGCCTAACTCAGAGT-CATATAAGATCAGA 1673
|||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1604 GGGAGGAAACTCATCAACCCGGTTTAGGGGAGCCTAACTCAG-GTTCATATAAGATCAGA 1662
Query 1674 C----G--G-TGCGTTTGTGAGCTGTTTATAAGCGTTCTCTATCACT----GGGGACAAG 1722
| | | ||||||||||||| |||| || ||||||||||||||| |||||||||
Sbjct 1663 CTTCAGACGGTGCGTTTGTGAGCCGTTTCTATGCGTTCTCTATCACTCACTGGGGACAAG 1722
Query 1723 CAATGTAAGCTCCTTGCCTAAGAAGCTCTCAGTATTAATGTATATGCTCTCTACTCTTTC 1782
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 CAATGTAAGCTCCTTGCCTGAGAAGCTCTCAGTATTAATGTATATGCTCTCTACTCTTTC 1782
Query 1783 CTTGGGACAAAATGTTTTCGCGGAAGCTATGATTCTGCATTGCAAGCATTTCACTTCTGT 1842
||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 1783 CTTAGGACAAAATGTTTACACGGAAGCTTTGATTCTGCATTGCAAGCATTTCACTTCTGT 1842
Query 1843 TACTTTCGAGCAATTGGAAATAAGTCAGACGGAGCGTTTTATG 1885
|||||||||| ||||||||| |||||||||||| |||||||||
Sbjct 1843 TACTTTCGAGAAATTGGAAAGAAGTCAGACGGAACGTTTTATG 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78656355925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5