BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15570.2
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480416 jgi|Araly1|480416|fgenesh2_kg.3__3117__AT2G15570.1 955 0.0
> Ahg480416 jgi|Araly1|480416|fgenesh2_kg.3__3117__AT2G15570.1
Length=746
Score = 955 bits (517), Expect = 0.0
Identities = 683/759 (90%), Gaps = 28/759 (4%)
Strand=Plus/Plus
Query 6 TCTTCTTCTTCTCAAATCACTCTTCAATGGCGA--T-TTCTTCTTC-T--TCCTCCTCTA 59
|||| |||||||| || | ||||||||||||| | ||||||||| | ||||||||||
Sbjct 1 TCTTTTTCTTCTC-AA--A-TCTTCAATGGCGATTTCTTCTTCTTCTTCGTCCTCCTCTA 56
Query 60 TATGTTTCAACCCCACTCGATTTCACACAGCTCGACAT-ATTTCATCTCCGTCGCGTCTC 118
||||||| ||| ||||||||| ||||||||||| | | |||||||||||||||||||||
Sbjct 57 TATGTTTTAACTCCACTCGATCGCACACAGCTCG-CCTGATTTCATCTCCGTCGCGTCTC 115
Query 119 TTCCCAGTCACCAGCTTctcccctcgctctctccgtt-tctccgacagacgatctctcct 177
|||||||||||||||||| |||||||| |||||| || ||||||| ||||||||||||||
Sbjct 116 TTCCCAGTCACCAGCTTCACCCCTCGCGCTCTCC-TTCTCTCCGATAGACGATCTCTCCT 174
Query 178 atcttcctccgcctctcgcctcCGTCT-TTCTCCTCTATGCGTTCGTGATTCTCGAGCAG 236
|||||||||||||||||||| |||||| || |||||| ||||||| |||||||| | ||
Sbjct 175 ATCTTCCTCCGCCTCTCGCCACCGTCTCTT-TCCTCTCTGCGTTCATGATTCTC--G-AG 230
Query 237 CAGCTGAAGTTACACAACGATCATGGGAAGACTCAGTTCTAAAAAGCGAAACCCCGGTGT 296
|||||||||||||| ||| |||||||||||||||||| || ||||||||||| || |||
Sbjct 231 CAGCTGAAGTTACAGAACAATCATGGGAAGACTCAGTCCTCAAAAGCGAAACGCCTGTGC 290
Query 297 TAGTAGAATTCTACACGAGTTGGTGCGGTCCATGTCGGATGGTCCACAGGATAATAGACG 356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TAGTAGAATTCTACACAAGTTGGTGCGGTCCATGTCGGATGGTCCACAGGATAATAGACG 350
Query 357 AAATAGCAGGGGACTATGCTGGAAAACTAAACTGCTATCTCCTTAATGCAGACAATGACT 416
|||||||| ||||||||| |||||||||||||| ||| |||| || |||||||||||||
Sbjct 351 AAATAGCATTGGACTATGCCGGAAAACTAAACTGTTATGTCCTGAACGCAGACAATGACT 410
Query 417 TGCCGGTGGCTGAAGAGTACGAGATAAAGGCTGTGCCGGTAGTTCTGCTCTTCAAGAACG 476
||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct 411 TGCCGGTGGCTGAAGAGTACGAGATAAAGGCTGTGCCAGTAGTACTGATTTTCAAGAACG 470
Query 477 GGGAGAAACGAGAGTCAATCATGGGTACAATGCCTAAAGAGTTCTATATTTCCGCCATTG 536
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 471 GGGAGAAACGAGAGTCCATCATGGGTACAATGCCTAAAGAGTTCTACATTTCCGCCATTG 530
Query 537 AAAGAGTCTTGAACTCATGAAGAAGGTAACAATCGTTGATGA-GAA--C-TCTCACTACC 592
||||||||||||||||||||||||||||||| || ||||||| ||| | ||||||||||
Sbjct 531 AAAGAGTCTTGAACTCATGAAGAAGGTAACA-TCATTGATGAAGAAGACCTCTCACTACC 589
Query 593 ACTTTGATTAAAAATATTGTT-GGA-AGATTATCATCATCGCTCCATTGCGATATGGTTG 650
|||||||| ||| |||||||| || | || |||| ||||||||||| |||||||||||
Sbjct 590 ACTTTGATCAAAGATATTGTTTGGTTA-AT-ATCAGAATCGCTCCATTTCGATATGGTTG 647
Query 651 ATGTCTTTGTTTCTTCTTTTATTCTCTGTGAATATAACTGTTGGGTTTGTGGAAAGATAG 710
|| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 648 ATATCTTTTTTTCTTCTTTTATTCTCTGTGAATATAACTTTTGGGTTTGTGGAAATATGG 707
Query 711 CTCAGGAAGTATTGTGAATACATAAATATTCCTTCTTCT 749
|||| ||||||||||||||||||| || |||||||||||
Sbjct 708 CTCAAGAAGTATTGTGAATACATATATCTTCCTTCTTCT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5