BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15580.1
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480417 jgi|Araly1|480417|fgenesh2_kg.3__3118__AT2G15580.1 952 0.0
> Ahg480417 jgi|Araly1|480417|fgenesh2_kg.3__3118__AT2G15580.1
Length=681
Score = 952 bits (515), Expect = 0.0
Identities = 634/690 (92%), Gaps = 13/690 (2%)
Strand=Plus/Plus
Query 49 TATGGCTGGTATGCTTCCCGGAGTTGAGTGTGCAAGGAGGCGGCGCTTCCACGGTGGTGC 108
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 TATGGCTGGTATGCTTCCCGGAGTCGAGTGTGCAAGGAGGCGACGCTTCCACGGTGGTGC 60
Query 109 T-CCTCCGATTGAATCCTCGAACACAGCTTCTGTGGCGGCTGCGGCGGGACACGTCTGGA 167
| || |||||||||||| |||||| | |||||||||| || || |||||||||||||
Sbjct 61 TACC-CCGATTGAATCCAAGAACAC-G--GCTGTGGCGGCAGCAGCAGGACACGTCTGGA 116
Query 168 CACGGCGACCATCGTTCTCTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCT 227
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 117 CGCGGCGACCATCGTTCTCTCTTTACACTACCAATTATGAGAGCCACCAGGCCCATGTCT 176
Query 228 CCTTCTCGGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTTG 287
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 177 CCTTCTCGGAGAGAAGTGTTAGGAACATATCTTATGGAGAAGACAACGATGAGAAACTTG 236
Query 288 ACGGAGCAGCCAAAGAGGCAAAGCAGAGGCTTAAC-AAGCGGCTGAGAATCCCACCACGT 346
||||||||||||||||||||||||||||||| ||| || |||||||||||||| | |||
Sbjct 237 ACGGAGCAGCCAAAGAGGCAAAGCAGAGGCTGAACGAA-CGGCTGAGAATCCCGCGGCGT 295
Query 347 ACAAGGCAAAATGGTAAAGACAAAGGGAATAAATTGGAGCAAGGAAAGGGTAAACCTCTC 406
|| |||||||||| |||||||| |||||||||||||||||||||||| |||||| | | |
Sbjct 296 ACGAGGCAAAATGATAAAGACAGAGGGAATAAATTGGAGCAAGGAAAAGGTAAAGCGCCC 355
Query 407 GGGGAC-TTACCGACCGAGGTGGTCGGGTTAAAGAAGAGCCGAGGAAGGTTGATGGAATG 465
|||| | |||||||| |||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 356 GGGG-CGTTACCGACAGAGGTGATCGGGTTAAAGAAGAGTCGAGGAAGGTTGATCGAATG 414
Query 466 GTTCAAGCGGCGAGTTAGGGAACAACAAGATTGTGCTATATGTCTAGACCGGTTCAAGAA 525
||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 415 GTTCAAGTGGAGAGTTAGGGAACAACAAGATTGTGCTATATGTCTAGACCTGTTCGAGAA 474
Query 526 GGGTGAGACCTTGGTACACCTACCATGTGCCCATAAGTTTCACTCCAT-ATGCTTATTGC 584
||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 475 GGGTGAGACCTTGGTGCACCTACCATGTGCCCATAAGTTTCACTCC-TCATGTTTATTGC 533
Query 585 CTTGGCTAGACACCAATGTTTATTGCCCATATTGTAGAACTGATATTTGGAATTAAATGT 644
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 534 CTTGGCTAGACACCAATGTTTATTGCCCATATCGTAGAACGGATATTTGGAATTAAATGT 593
Query 645 TATATTTTTGATGTCATATTTCGAGATGtttttttATGGCTTATCTTAGGTTTTAGGAAT 704
||||||| ||||||||||||||| |||| ||| |||||| ||||||| ||||||||||
Sbjct 594 AATATTTTA-ATGTCATATTTCGAGGTGTTGTTT-ATGGCTAATCTTAGATTTTAGGAAT 651
Query 705 TTAAACATAAAATGACTAGCGCAATCAATA 734
||||||||||| |||||||||| |||||||
Sbjct 652 TTAAACATAAATTGACTAGCGCGATCAATA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5