BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15590.2
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480419 jgi|Araly1|480419|fgenesh2_kg.3__3120__AT2G15590.2 880 0.0
Ahg343146 jgi|Araly1|343146|fgenesh1_pg.C_scaffold_3002909 326 1e-88
> Ahg480419 jgi|Araly1|480419|fgenesh2_kg.3__3120__AT2G15590.2
Length=581
Score = 880 bits (476), Expect = 0.0
Identities = 546/581 (94%), Gaps = 0/581 (0%)
Strand=Plus/Plus
Query 7 AATGTCGAACCACGCGCCACAGCCTCCAAGACCTCTGATGAAGCAATACTCGTGGTCACC 66
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AATGTCGAACCACGCGCAACAGCCTCCAAGACCTCTGATGAAGCAACACTCGTGGTCACC 60
Query 67 GGACATGAGTCGCGAAGAGGCTTGGCTGCGTAAGAAAAAGAAACGCCCACTGGATCTCCT 126
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGACATGAATCGCGAAGAGGCTTGGCTGCGTAAGAAAAAGAAACGCCCACTGGATCTCCT 120
Query 127 TCCTCGCAGCAAGAGTGTCACGAATGATGATATCGAGGAGCTTAAAGGCTGTTTCGAGCT 186
||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 121 TCCTCGCAGCAAGAGTGTCACAAACGACGATATCGAGGAGCTTAAAGGCTGCTTCGAGCT 180
Query 187 TGGTTTTGGGTTTGAAACAGAATCTCCTGATTTGAATCCAAGGCTCTCCCATACAATCCC 246
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 181 TGGGTTTGGGTTTGAAACAGAATCTCCTGATTTGAATCCAAGGCTCTCCCTTACAATACC 240
Query 247 CGCTCTTGATCTGTACTGCGCGGTTCATAGACAATACAGCAACCATTTGTCTCGGACGTC 306
|||||| ||| |||| ||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 241 CGCTCTCGATTTGTATTGCGCGGTTCATAGACAGTACAGCAACCATTTGTCTAGAACGTC 300
Query 307 TTCATTCGCGTCGGATCATGAAGTCAGCAACTCCAACAACATCACGACCATCGTCGACAA 366
||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 301 TTCATTCGCGTCGGAACATGAAGTCAGCAACTCCAACAGCACCACAACCATCGTCGACAA 360
Query 367 AGGTGATGATCGGAAGACGATGAAGCAGAAGCTGAAACAATGGGCTAAGGTGGTAGGGTT 426
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 AGGTGATGACCGTAAGACGATGAAGCAGAAGCTGAAACAATGGGCTAAGGTGGTCGGGTT 420
Query 427 TTCGGTGCGGCACTCTTCCGGAAAACCCAAATTGATGTCAGAAGAATGACAGTTTTGTAA 486
| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 421 TACGGTGCGGCACTCTTCCGGGAAACACAAATTGATGTCAGAAGAATGACAGTTTTGTAA 480
Query 487 TATAAAGTTAACAAACACTAAAATGTTTAGTATTTGAATGTTAGTGGATAAGACACCGTC 546
||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 481 TATAATGTTAACAAACACTAAAATGTTTAATATATGAATGTTAGTGGATAAGACACCGTC 540
Query 547 TTATTAAAGTTTATGAAAACCAATTAAAAGAAAATTTATCG 587
|| | |||||||||| |||| |||||||||||| ||||||
Sbjct 541 TTGTCAAAGTTTATGTGAACCGATTAAAAGAAAAATTATCG 581
> Ahg343146 jgi|Araly1|343146|fgenesh1_pg.C_scaffold_3002909
Length=456
Score = 326 bits (176), Expect = 1e-88
Identities = 375/468 (80%), Gaps = 26/468 (6%)
Strand=Plus/Plus
Query 8 ATGTCGAACCAC-GC--GCCACAGCCTCCAAGACCTCTGATGAAGCAATACTCGTGGTCA 64
|||||||||||| | ||||||||| |||| |||||||||||||||| | || | | ||
Sbjct 1 ATGTCGAACCACAACAAGCCACAGCCGCCAAAACCTCTGATGAAGCAACAGTCTTTGCCA 60
Query 65 CCGGACATGAGTCGCGAAGAGGCTTGGCTGCGTAAGAAAAAGAAACGCCCA-CTGGATC- 122
| ||| | | |||||||||||||||||||| | ||| |||| | ||| | | |||
Sbjct 61 CTAGACGTAAACCGCGAAGAGGCTTGGCTGCGGATGAAGAAGAGGCATCCATCAG-ATCG 119
Query 123 TCCTTCCTCGCAGCAAGAG-TG-T-CACGAAT-GATGATATCGAGGAGCTTAAAGGCTGT 178
|| ||| |||||||||||| || | ||| || || |||||||||||||| ||||||||
Sbjct 120 TC-TTCGTCGCAGCAAGAGCTGCTTCAC-AAGCGACGATATCGAGGAGCTCAAAGGCTGC 177
Query 179 TTCGAGCTTGGTTTTGGGTTTGAAACAGAATCTCCTGA-TTTGAATCCAAGGCTCTCCCA 237
||||| || || ||||||||||| |||| |||||||| ||| |||||||| |||||| |
Sbjct 178 TTCGACCTAGGGTTTGGGTTTGAGCCAGATTCTCCTGACTTT-AATCCAAGACTCTCCAA 236
Query 238 TACAATCCCCGCTCTTG-ATCTGTACTGCGCGGTTCATAGACAATACAGCAACCATTTGT 296
|||||||| ||| ||| || | ||| || | |||| ||||| ||||||||| |||||
Sbjct 237 AACAATCCCAGCT-TTGGATTTATACAGCACCATTCAAAGACAGTACAGCAACTATTTGC 295
Query 297 CTCGGACGTCTTCAT-TCGCGTCGGATCA-TGAAGTCAGCAACTCCAACAACATCACGAC 354
| ||||| || || | | |||||||| | ||| ||||||||||| | || | ||||||
Sbjct 296 CCCGGACCTCATCGTCT-GCGTCGGAA-AGTGACGTCAGCAACTCTAGCA-C--CACGAC 350
Query 355 CATCGTCGACAAAGGTGATGATCGGAA-GACGATGAAGCAGAAGCTGAAACAATGGGCTA 413
|||||| |||||| ||||||| |||| |||||||||| |||||||||||||||||||||
Sbjct 351 TATCGTCAACAAAGATGATGAT-GGAAAGACGATGAAGAAGAAGCTGAAACAATGGGCTA 409
Query 414 AGGTGGTAGGGTTTTCGGTGCGGCACTCTTCCGGAAAACCCAAATTGA 461
||||||| | || ||| | | ||||||| ||||| ||||| |||||||
Sbjct 410 AGGTGGTTGCGTGTTCTGCGAGGCACTCCTCCGGCAAACC-AAATTGA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21481596607
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5