BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G15610.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343146 jgi|Araly1|343146|fgenesh1_pg.C_scaffold_3002909           508    1e-143


> Ahg343146 jgi|Araly1|343146|fgenesh1_pg.C_scaffold_3002909
Length=456

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 335/364 (92%), Gaps = 3/364 (1%)
 Strand=Plus/Plus

Query  1    ATGTCGAACCAAAACAAGCCACAGCCGCCAAAACCTCTGATGAAGCAACAGTCTTTGCCA  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCGAACCACAACAAGCCACAGCCGCCAAAACCTCTGATGAAGCAACAGTCTTTGCCA  60

Query  61   CCAGACATAAACCGCGAAGAGGCTTGGCTGCGAATGAAGAAAAAGCATCCATCGGCCCGT  120
            | |||| ||||||||||||||||||||||||| |||||||| | ||||||||| |  |||
Sbjct  61   CTAGACGTAAACCGCGAAGAGGCTTGGCTGCGGATGAAGAAGAGGCATCCATCAGATCGT  120

Query  121  CTTCATCGCAGCAAGAGCTGCGTCACAAACGACGATATCGAGGAGCTCAGAGGCTGCTTC  180
            |||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||
Sbjct  121  CTTCGTCGCAGCAAGAGCTGCTTCACAAGCGACGATATCGAGGAGCTCAAAGGCTGCTTC  180

Query  181  GACCTAGGGTTTGGGTTTGAGCCAGATTCTCTTGACTTTAATCCAAGTCTCTCCAAAACA  240
            ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  181  GACCTAGGGTTTGGGTTTGAGCCAGATTCTCCTGACTTTAATCCAAGACTCTCCAAAACA  240

Query  241  ATCCCAGCTTTGGATTTGTACAGCGCCATTCACAGACAGTACAGCAACCATTTGTCTCGG  300
            ||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||| | |||
Sbjct  241  ATCCCAGCTTTGGATTTATACAGCACCATTCAAAGACAGTACAGCAACTATTTGCCCCGG  300

Query  301  ACATGGTCGTCTACGTCGGAACGTGACGTCA--A-CTCTAGCACCACGACTATCGTCAAC  357
            || |  |||||| |||||||| |||||||||  | |||||||||||||||||||||||||
Sbjct  301  ACCTCATCGTCTGCGTCGGAAAGTGACGTCAGCAACTCTAGCACCACGACTATCGTCAAC  360

Query  358  AAAG  361
            ||||
Sbjct  361  AAAG  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5