BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15620.1
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931290 jgi|Araly1|931290|scaffold_303747.1 2852 0.0
> Ahg931290 jgi|Araly1|931290|scaffold_303747.1
Length=1802
Score = 2852 bits (1544), Expect = 0.0
Identities = 1704/1782 (96%), Gaps = 8/1782 (0%)
Strand=Plus/Plus
Query 76 CATGActtctttctctctcactttcacatctcctctcctcccttcctcctccACCAAACC 135
||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||
Sbjct 24 CATGACTTCTTTCTCTCTCACTTTCACATCTCCTCTCCTTCCTT-CT--TCCTCCAAACC 80
Query 136 CAAAAGATCCGTCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCCGAATCCACCGCCTC 195
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 81 CAAAAGATCCATCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCAGAATCCACCGCCTC 140
Query 196 TGTTGACGCAGATCGTCTCGAGCCAAGAGTTGAGTTGAAAGATGGtttttttATTCTCAA 255
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 141 TGTTGACGCAGATCGTCTTGAGCCAAGAGTTGAATTGAAAGATGGGTTTTTTATTCTCAA 200
Query 256 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATCGAGAGAGAGCCCAT 315
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 201 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATTGAGAAAGAGCCAAT 260
Query 316 GAAGTTGTTTATGGAGAATGGTATTGAAGAGCTTGCTAAGAAATCTATGGAAGAGCTTGA 375
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 261 GAAGTTGTTTATGGAGAATGGTATTGAAGAACTTGCTAAGAAATCTATGGAAGAGATTGA 320
Query 376 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 380
Query 436 CCGTAGAAAGCATCAGTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 495
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CCGTAGAAAGCATCATTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 440
Query 496 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGGAAGTATGGTGAAGATGGGTG 555
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 441 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGAAAGTATGGTGAAGATGGATG 500
Query 556 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 560
Query 616 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGTTTAACGAGTCTT-CAAAGTGGTATGGATA 674
|||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||
Sbjct 561 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGGTTAACGAGT-TTGCAGAGTGGTATGGATA 619
Query 675 ACGTGAGGAACCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 734
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 ACGTGAGGAATCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 679
Query 735 CGAGGCCTTACACGAATCTCCTTTCGCAGTTTATCACCGCTAATTCACAAGGAAACCCCG 794
||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||
Sbjct 680 CGAGGCCTTACACGAATCTTCTTTCGCAGTTTATTACTGCTAATTCAGTAGGAAACCCCG 739
Query 795 ATTTCACCAACTTGCCAAGAAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 854
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ATTTCACCAACTTGCCAAGGAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 799
Query 855 AGCATCCACATATCAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 914
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 AGCATCCACATATTAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 859
Query 915 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAAGCGATTCCTCTTG 974
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 860 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAGGCCATTCCTCTTG 919
Query 975 ATGCTTGGGTCCCTGCTGATGACGTTCTTCCACTCTGCAAAGCTGTTCTAGAGGCTTACA 1034
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 920 ATGCTTGGGTCCCTGCTGATGAAGTTCTTCCACTTTGCAAAGCTGTTCTAGAGGCCTACA 979
Query 1035 GAGATCTTGGAACTCGAGGAAACCGACAGAAGACAAGAATGATGTGGCTTATCGACGAAC 1094
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 980 GAGATCTTGGAACTCGAGGAAACAGACAGAAGACAAGAATGATGTGGCTTATTGACGAAC 1039
Query 1095 TTGGTGTTGAAGGATTTAGAACTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1154
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TTGGCGTTGAAGGATTTAGAGCTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1099
Query 1155 GAGGATCTTCAGAGGATCTTGTGAACAAACAGTGGGAGAGGAGAGACTATTTCGGAGTCA 1214
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1100 GAGGATCTTCAGAGGATCTTGTGAACAAACAATGGGAGAGGAGAGACTATTTCGGAGTCC 1159
Query 1215 ACCCTCAGAAACAAGAAGGTCTTAGCTTCGTGGGGCTTCACGTTCCGGTTGGTAGGCTAC 1274
|||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 1160 ACCCTCAGAAGCAAGAAGGTCTTAGCTTCGTGGGCCTTCATGTTCCGGTTGGAAGGCTAC 1219
Query 1275 AAGCTGATGACATGGATGAGCTTGCTCGGTTAGCTGATACCTACGGGTCAGGTGAGCTAA 1334
|||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1220 AAGCTGATGACATGGACGAGCTTGCTCGGTTAGCTGACACCTATGGCTCAGGTGAGCTAA 1279
Query 1335 GACTCACAGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1394
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GACTCACGGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1339
Query 1395 TGCTTCAAGAGCCGTTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTAATGAAAG 1454
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1340 TGCTTCAAGAGCCATTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTGATGAAAG 1399
Query 1455 GCTTAGTTGCTTGTACCGGTAGCCAGTTCTGCGGACAAGCGATAATCGAGACTAAGCTAA 1514
|||||||||||||||| |||| |||||| ||||| ||||| ||||||||||| || || |
Sbjct 1400 GCTTAGTTGCTTGTACTGGTAACCAGTTTTGCGGGCAAGCAATAATCGAGACCAAACTCA 1459
Query 1515 GAGCTTTAAAAGTGACAGAAGAAGTAGAGAGACTTGTATCTGTGCCAAGACCGATAAGGA 1574
||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1460 GAGCTTTAAAAGTTACGGAAGAAGTGGAGAGACTTGTATCTGTGCCAAGACCGATAAGAA 1519
Query 1575 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTAGCAGATATCGGATTCA 1634
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1520 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTCGCAGATATCGGGTTCA 1579
Query 1635 TGGGATGCTTAACACGAGGCGAGGAA-GGAAAGCCAGTCGAGGGTGCTGACGTGTACGTC 1693
|||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||
Sbjct 1580 TGGGATGCTTAACACGTGGCGAG-AACGGAAAGCCTGTCGAGGGTGCTGACGTGTACGTC 1638
Query 1694 GGGGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTATAAGAAAGGTGTTCGTGTC 1753
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1639 GGTGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTACAAGAAAGGTGTTCGTGTG 1698
Query 1754 ACGGAGTTGGTTCCATTGGTGGCTGAGATTCTGATCAAAGAATTTGGTGCTGTGCCTAGA 1813
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1699 ACGGATTTGGTTCCATTGGTGGCTGAGATTCTAATCAAAGAATTTGGTGCTGTGCCTAGA 1758
Query 1814 GAAAGAGAAGAGAATGAAGATTGATTCAAAAGCTATTGGATT 1855
|| ||||||||||||||||||||||||||| ||| |||||||
Sbjct 1759 GAGAGAGAAGAGAATGAAGATTGATTCAAA-GCTTTTGGATT 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79380070580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5