BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15630.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480422 jgi|Araly1|480422|fgenesh2_kg.3__3123__AT2G15630.1 2721 0.0
> Ahg480422 jgi|Araly1|480422|fgenesh2_kg.3__3123__AT2G15630.1
Length=1872
Score = 2721 bits (1473), Expect = 0.0
Identities = 1737/1864 (93%), Gaps = 19/1864 (1%)
Strand=Plus/Plus
Query 1 ATGAGACGTTTCACAGTCCCCTGTATCTTACGCCACCGAATCTCAATTCTTTCCGGCGCC 60
||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAGACAAATCACATTCCCCTGCATCTTACGCCACCGAATCTCTATTCTTTCCGGCGCC 60
Query 61 GGCTATTCTCCTGCCGCCGCTCGTCTTTCCTCTTTAGCACAAACAT-CA--ACTC-CCGA 116
||||||| |||| ||||||| ||||| || ||||| || ||||||| || || | ||||
Sbjct 61 GGCTATTATCCTACCGCCGCACGTCTCTCTTCTTTGGCCCAAACATCCACCAC-CACCGA 119
Query 117 GTCAGTA-TTACCGCCGATAACTTCTGAAATTTTGCTCGAGTCGATAAGATCTTCTCAGT 175
|||| | |||||||| |||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 120 GTCA-CAGTTACCGCCAATAACTTCTGAAGTTTTGCTCGAGTCGATAAAATCCTCTCAGT 178
Query 176 GGCATATCGTCGAACACGTTGCAGACAAACTCACACCTTCGC-TTGTATCTACAACTCTA 234
||||| || ||||||||||| | ||||||||||||||| | | ||||||| ||||||||
Sbjct 179 GGCATTTCATCGAACACGTTACGGACAAACTCACACCTAC-CATTGTATCAACAACTCTT 237
Query 235 CTCAGCCTCGTCAAGACTCCTAATTTAGCCTTCAATTTCGTCAACCACATCGACCTTTAT 294
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 238 CTCAGCCTCGTCAAGACTCCTGATTTAGCCTTCAATTTCGTCAACCACATCGATCTTCGT 297
Query 295 CGCCTGGACTTTCAAACACAGTGTCTAGCCATCGCTGTCATCTCCAAGCTCTCTTCTCCA 354
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 298 TGCCTGGACTTTCAAACACAGTGTCTAGCCATTGCTGTCGTCTCCAAGCTCTCTTCTCCG 357
Query 355 AAACCCGTTACTCAGTTACTGAAAGAAGTCGTTACTTCTCGTAAGAACTCAATAAGAAAC 414
||| | ||||||||||| |||||||||||||||| | |||||||||||||| ||||| ||
Sbjct 358 AAATCTGTTACTCAGTTGCTGAAAGAAGTCGTTAGTACTCGTAAGAACTCAGTAAGAGAC 417
Query 415 CTTTTCGATGAATTAGTGCTTGCCCATGATCGATTAGAGACGAAAAGCACGATTCTTTTC 474
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 418 CTTTTCGATGAATTGGTGCTTGCCCATGATCGATTACAGACTAAAAGCACGATCCTTTTC 477
Query 475 GATC-TCTTAGTCAGATGTTGTTGTCAATTGAGAATGGTTGATGAAGCCATAGAGTGCTT 533
|| | || | ||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 478 GA-CTTCATGGTCAGATTTTACTGTCAATTGAGAATGGTAGATGAAGCCATAGAGTGCTT 536
Query 534 TTACTTGATGAAGGAGAAAGGTTTTTATCCCAAAACTGAAACTTGTAATCACATTTTGAC 593
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 TTACCTGATGAAGGAGAAAGGTTTTGATCCCAAAACTGAAACTTGTAATCACATTTTGAG 596
Query 594 TTTGTTATCAAGGTTGAATCGTATAGAGAACGCTTGGGTCTTCTATGCTGATATGTATAG 653
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 597 TTTGTTATCGAGGTTGAATCGTATAGAGAACGCTTGGGTCTTCTACGCTGACATGTATAG 656
Query 654 GATGGAGATTAAATCGAATGTGTACACTTTCAATATAATGATCAATGTATTGTGTAAGGA 713
||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 657 AATGGAGATTAAGTCGAATGTTTACACGTTCAATATAATGATCAATGTATTGTGCAAGGA 716
Query 714 AGGGAAGTTGAAGAAGGCTAAGGGTTTTTTA-GGTATCATGGAG-GTTTTTGGGATTAAG 771
|||||||||||||||||| ||||| |||||| || ||||||||| | |||||| ||||||
Sbjct 717 AGGGAAGTTGAAGAAGGCCAAGGGATTTTTATGG-ATCATGGAGAG-TTTTGGAATTAAG 774
Query 772 CCAACTATAGTGACTTACAACACTCTTGTTCAAGGGTTTTCTTTGAGAGGACGAATCGAA 831
|| ||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 775 CCTACTGTTGTGACTTACAACACTCTTGTTCAAGGGTATTCTTTGAGAGGACGAATCGAA 834
Query 832 GGAGCTCGTTTGATTATCAGTGAAATGAAATCTAAAGGCTTTCAACCAGATATGCAGACG 891
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 835 GGTGCTCGTATGATTATCAGTGAAATGAAATCTAAAGGCTTTCAACCAGATTTGCAGACG 894
Query 892 TATAATCCGATTCTGTCTTGGATGTGTAATGAAGGAAGAGCTTCTGAGGTGTTGAGGGAG 951
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 895 TACAACCCGATTCTGTCTTGGATGTGTAATGAAGGAAGAGCCTCTGAGGTGTTGAGGGAG 954
Query 952 ATGAAGGAGATTGGGTTGGTTCCGGATTCTGTTTCGTACAATATTTTGATCCGTGGTTGT 1011
||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 955 ATGAAGGGGAGTGGGTTGGTTCCGGACTCTGTTTCGTACAATATTTTGATTCGTGGTTGT 1014
Query 1012 AGTAACAATGGGGATTTGGAGATGGCTTTTGCTTACAGGGATGAGATGGTGAAACAAGGT 1071
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGTAACAATGGGGATTTGGAGACAGCTTTTGCTTACAGGGATGAGATGGTGAAACAAGGT 1074
Query 1072 ATGGTGCCGACGTTTTATACTTACAACACGTTGATACATGGTTTGTTTATGGAGAATAAG 1131
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1075 ATGGTGCCGACGTTTTATACTTACAACACGTTGATTCATGGTTTGTTTATGGAGAATAAG 1134
Query 1132 ATAGAAGCTGCTGAGATATTGATTAGGGAGATTAGAGAGAAGGGTATAGTTTTGGATTCT 1191
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1135 ATAGAAGCTGCGGAGATATTGATTAGGGAGATTAGAGAGAAGGGTATAGTCTTGGATTCT 1194
Query 1192 GTCACTTACAATATACTGATAAATGGTTATTGCCAGCATGGAGATGCAAAGAAAGCATTT 1251
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTCACGTACAATATACTCATAAATGGTTATTGCCAGCATGGAGATGCAAAGAAAGCATTT 1254
Query 1252 GCTTTGCATGACGAAATGATGACCGATGGAATTCAGCCTACGCAGTTTACTTATACGTCG 1311
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GCTTTGCACGACGAAATGCTGACCGATGGAATTCAGCCTACGCAGTTTACTTATACGTCG 1314
Query 1312 CTTATTTATGTCCTGTGTAGAAAAAATAAAACGAGGGAAGCGGATGAGTTGTTTGAGAAA 1371
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTTATTTATGTCCTATGTAGAAGAAATAAAACGAGGGAAGCGGATGAGTTGTTTGAGAAA 1374
Query 1372 GTTGTGGGAAAGGGAATGAAGCCTGATCTTGTGATGATGAATACCTTGATGGATGGTCAC 1431
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GTTGTAGGCAAGGGAATGAAGCCTGATCTTGTGATGATGAATACCTTGATGGATGGTCAC 1434
Query 1432 TGTGCTATAGGCAACATGGACCGTGCATTTTCGCTT-CTTAAAGAGATGGACATGATGAG 1490
||||| | ||||||||||||||||||||||||| || ||||| |||||||||| |||||
Sbjct 1435 TGTGCAACAGGCAACATGGACCGTGCATTTTCG-TTGCTTAAGGAGATGGACAGGATGAA 1493
Query 1491 TATCA-ATCCTGATGATGTGACATACAATTGTTTGATGCGAGGGCTATGTGGAGAAGGGA 1549
||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1494 TAT-AGATCCTGATGATGTGACATACAATTGTTTGATGCGAGGGCTCTGTGGAGAAGGGA 1552
Query 1550 AATTTGAGGAAGCTCGTGAGCTGATGGGAGAGATGAAGAGAAGAGGAATCAAACCTGACC 1609
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1553 AATTTGAGGAAGCTCGTGAGCTGATGGGGGAGATGAAGAGAAGAGGAATCAAACCTGACC 1612
Query 1610 ACATTAGTTACAACACTCTAATAAGTGGGTATAGTAAGAAAGGGGATACAAAGCATGCTT 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 ACATTAGTTACAACACTCTAATAAGTGGGTATAGTAAGAAAGGGGATACAAAGCATGCTT 1672
Query 1670 TCATGGTTCGTGATGAGATGTTGAGTCTCGGGTTTAATCCTACTCTTCTCACTTACAATG 1729
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1673 TCATGGTTCGGGATGAGATGTTGAGTCTCGGGTTTAATCCTACTCTTCTCACATACAATG 1732
Query 1730 CTCTGTTAAAAGGTTTGAGTAAAAACCAGGAGGGTGAACTAGCAGAGGAGCTGCTAAGGG 1789
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1733 CTCTGTTAAAGGGTTTGAGTAAAAACCAGGAGGGTGAACTCGCAGAGGAGCTACTAAGGG 1792
Query 1790 AAATGAAAAGTGAAGGCATCGTTCCTAATGACAGCTCCTTTTGCTCTGTCATTGAGGCAA 1849
||||||||||||||||||| ||||||||||||| |||||| || ||||||||||| ||||
Sbjct 1793 AAATGAAAAGTGAAGGCATTGTTCCTAATGACATCTCCTTCTGTTCTGTCATTGAAGCAA 1852
Query 1850 TGTC 1853
||||
Sbjct 1853 TGTC 1856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5