BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15690.1
Length=2783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480424 jgi|Araly1|480424|fgenesh2_kg.3__3125__AT2G15690.1 3164 0.0
> Ahg480424 jgi|Araly1|480424|fgenesh2_kg.3__3125__AT2G15690.1
Length=2660
Score = 3164 bits (1713), Expect = 0.0
Identities = 2057/2218 (93%), Gaps = 43/2218 (2%)
Strand=Plus/Plus
Query 564 TCCTCAACAAGGTGGTC-AAATGTCTCAATACGGTGGTCACAA-TCCTCAACACGGTGGT 621
||||||| | ||||||| |||| ||||| |||||||||| || |||||| ||||||||
Sbjct 468 TCCTCAATACGGTGGTCAAAAT-CCTCAACACGGTGGTCA-AAGGCCTCAATACGGTGGT 525
Query 622 C-ACAGGCCTCAGTACGGTGGTCAGAGGCCTCAATACGGTGGACCTGGTAACAATTATCA 680
| || ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 526 CAAC-GGCCTCAATACGGTGGTCAGAGGCCTCAATACGGTGGAGCTGGTAACAATTATCA 584
Query 681 GAATCAGAATGTTCAACAAAGTAATCAGAGTCAGTACTACACTCCGCAGCAGCAGCAACA 740
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 585 GAATCAGAATGGTCAACAAAGTCATCAGAGTCAGTATTACACTCCGCAGCAGCAGCAGCA 644
Query 741 ACCGCAACCACCACGAAGCTCGAATCAAAGCCCTAATCAGATGAATGAGGTAGCTCCTCC 800
| ||||||||| |||||||||||||||| | |||||||||| |||||||||| | |||
Sbjct 645 GCAGCAACCACCGCGAAGCTCGAATCAAATCTCTAATCAGATCAATGAGGTAG-T--TCC 701
Query 801 TCCTAGTGTTGAAGAGGTGATGAGGTTATGTCAGCGTAGGCTATATAAAGATGCTATTGA 860
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 702 TCCTAGTGTTGAAGAGGTGATGAGGTTATGTCAGCGTAGGCTTTATAAAGATGCTATTGA 761
Query 861 ATTGCTTGATAAAGGAGCTATGCCTGATAGAGAATGTTTCGTTTTGTTGTTTGAGTCTTG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 762 ATTGCTTGATAAAGGAGCTATGCCTGATAGAGAATGTTTCGTTTTGTTGTTTGAGTCGTG 821
Query 921 TGCGAATTTGAAGTCGCTTGAGCATTCTAAGAAGGTACATGATCATTTCCTTCAGTCTAA 980
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 822 TGCGAATTTGAAGTCACTTGAGCATTCTAAGAAGGTACATGATCATTTCCTGCAGTCTAA 881
Query 981 GTTTAGAGGTGATCCAAAACTTAACAATATGGTGATTAGTATGTTTGGAGAGTGTAGTAG 1040
||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 882 GTTTAGAGGTGATCCGAAACTGAACAATATGGTGATTAGTATGTTTGGGGAATGTAGGAG 941
Query 1041 TATTACTGATGCTAAGAGAGTGTTTGATCATATGGTTGATAAAGATATGGATTCTTGGCA 1100
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 942 TGTTACTGATGCTAAGAGAGTTTTTGATCATATGGTTGATAAAGATATGGATTCTTGGCA 1001
Query 1101 TTTGATGATGTGTGCGTATAGTGATAACGGAATGGGAGATGATGCGTTGCATTTGTTCGA 1160
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1002 TTTGATGATGCGTGCGTATAGTGATAACGGAATGGGAGATGATGCGTTGCATTTGTTTGA 1061
Query 1161 AGAGATGACGAAACATGGGTTGAAGCCGAACGAGGAGACTTTCCTTACGGTCTTCTTGGC 1220
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1062 GGAGATGACGAAACAAGGGTTGAAGCCGAACGAGGAGACTTTCCTTACGGTTTTCTTGGC 1121
Query 1221 TTGTGCTACTGTTGGTGGTAT-AGAAGAAGCGTTTTTGCATTTTGATTCGATGAAGAA-C 1278
||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |
Sbjct 1122 TTGTGCTACTGTTGGTGGTATTA-AAGAAGCGTTTTTGCATTTTGATTCGATGA-GAAAC 1179
Query 1279 GAGCATGGGATTAGTCCGAAGACAGAGCATTATTTGGGTGTTTTAGGTGTTCTTGGGAAA 1338
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1180 GAGCATGGGATCAGTCCGAAGACAGAACATTATTTGGGTGTTTTAGGTGTTCTTGGAAAA 1239
Query 1339 TGTGGACATCTTGTTGAGGCTGAGCAATATATCCGTGATCTTCCGTTTGAACCCACAGCT 1398
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1240 TGTGGACATCTTGTTGAGGCTGAGCAATACATTCGTGATCTTCCGTTTGAACCCACAGCT 1299
Query 1399 GATTTCTGGGAGGCTATGCGGAACTATGCTCGGTTACATGGTGATATCGATTTAGAGGAT 1458
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1300 GATTTCTGGGAAGCTATGAGGAACTATGCTCGGTTACATGGAGATATCGATTTAGAGGAT 1359
Query 1459 TACATGGAGGAATTGATGGTTGATGTTGATCCTTCAAAGGCTGTAATCAACAAAATTCCT 1518
|||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 1360 TACATGGAAGAATTGATGGTTGATGTTGACCCTTCAAAGGCGGTAACCAACAAAATTCCT 1419
Query 1519 ACTCCTCCACCTAAATCATTCAAGGAAACAAATATGGTTACTAGTAAGAGTAGGATCCTT 1578
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1420 ACCCCTCAACCTAAATCATTCAAGGAAACAAATATGGTTACTAGTAAGAGTAGGATTCTC 1479
Query 1579 GAGTTTCGAAATCTGACTTTCTACAAGGATGAAGCAAAGGAGATGGCTGCAAAGAAAGGA 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GAGTTTCGAAATCTGACTTTCTACAAGGATGAAGCAAAGGAGATGGCTGCAAAGAAAGGA 1539
Query 1639 GTGGTTTATGTTCCTGACACACGGTTTGTGCTTCATGATATCGATCAAGAGGCTAAAGAA 1698
|||||||||||||| |||||||| ||||| || |||||||||||||||||||| ||||||
Sbjct 1540 GTGGTTTATGTTCCGGACACACGATTTGTTCTGCATGATATCGATCAAGAGGCCAAAGAA 1599
Query 1699 CAGGCACTACTCTACCACAGTGAGAGGTTAGCGATTGCTTATGGTATCATATGCACCCCA 1758
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 CAGGCACTACTCTATCACAGTGAGAGGTTAGCGATTGCTTATGGTATCATATGCACCCCA 1659
Query 1759 CCAAGGAAGACCCTAACAATCATCAAGAATCTCCGTGTGTGTGGGGATTGTCACAACTTT 1818
|| |||||||| || |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1660 CCGAGGAAGACGCTCACAATCATTAAGAATCTCCGTGTGTGTGGGGACTGTCACAA-TTT 1718
Query 1819 -ATCAAGATCATGTCCAAAATCATTGGTAGGGTGTTGATCGTGAGAGACAACAAACGTTT 1877
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1719 CATCAAGATCATGTCCAAAATCATTGGTAGGGAGTTGATCGTGAGAGACAACAAACGTTT 1778
Query 1878 CCATCACTTCAAAGACGGTAAATGTTCTTGCGGGGATTACTGGTAGAGCGGCGTTTT-CT 1936
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1779 CCATCACTTCAAAGACGGTAAATGTTCTTGTGGTGATTACTGGTAGAGCGGCGTTTTTCT 1838
Query 1937 GTGACTTTGTTTCGCATCATGTATAGCGCGCTCTAAGCTCTCGCCAGAACTTTGCTAGCA 1996
||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct 1839 GTGCCTTTGTTTCGCATCATGTATAGCGC--TCTAAGCTCTTGCCAGAACTCTGCTAGCA 1896
Query 1997 GTTGGGAAATGGAATAGTATTTGCTACGCTGTAACAAGTTTCATCTGCTCTAGA-CCCTT 2055
|||||||||| |||||||||||||||||||||||||| ||||||||||| | || |||||
Sbjct 1897 GTTGGGAAATCGAATAGTATTTGCTACGCTGTAACAAATTTCATCTGCTTT-GAACCCTT 1955
Query 2056 TTACATGAGGAATTA--TCAAGTTTATTGCTTTATATCTACTATTATTGGTCTCATTCTC 2113
||||||||| |||| | ||||| ||||||||||||||| | | |||||||| |||||
Sbjct 1956 TTACATGAGTTATTAAAT-AAGTT-ATTGCTTTATATCTA-T-T-ATTGGTCTTATTCTG 2010
Query 2114 GAAGAACGT-G-ACTTAATGTT--TTGAAA-TTAGATCGTATGAATAATGAACTTTGAT- 2167
||||||| | | | | |||| || ||| ||| | | || | ||| |||||
Sbjct 2011 GAAGAACATTGGAGATCATGTCGATTCAAAGTTACAA-G-ATT--TCATGT--TTTGAGA 2064
Query 2168 TACA-TCAACAGAGAGAGATATGGTT-AGACATTGTTGGAAGACATCATTTTGATGAACT 2225
|||| | |||||||| ||| || || |||||||||||| |||||||| | ||||| |
Sbjct 2065 TACAAT-AACAGAGACTGATCTG-TTCAGACATTGTTGGTGGACATCATCCTCATGAATT 2122
Query 2226 CTTCCATATTAACCAATCCATCACCATCTGCATCAACAGCTCTAACCATCCTGTTGCAGT 2285
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2123 CTTCCATATTAACCAATCCATCACCATCTGCATCAACAGCTCTCACCATCCTCTTGCAGT 2182
Query 2286 CCTCTAAGCTACATCTCTCACCAAGCTTCCACAGAACCGACATCACTTCCTCTGCGCTTA 2345
||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct 2183 CCTCTAAGCTACATCTCTCCCCAAGCTTCCTCAGAACCGACATAACTTCCTCTGCGCTTA 2242
Query 2346 TCTTCCCATCGCCGTTCAAATCAAAAGTCCAGAAAGAATTTCGTATATCCGAAGACCTAA 2405
|||||||||| ||||||||||| ||||||||||||| ||||||||||| || |||||||
Sbjct 2243 TCTTCCCATCCCCGTTCAAATCGAAAGTCCAGAAAGCGTTTCGTATATCAGATGACCTAA 2302
Query 2406 TCCCACCACTTCTCTTGTATGCATCAATAAACTCCCTGAAATCAATAAACCCATCACCGT 2465
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2303 TCCCTCCACTTCTCTTGTATGCATCAATAAACTCCCTGAAATCAATAAACCCATCACCGT 2362
Query 2466 CCAGATCCACAGCCTTAAAGATCTTAGGCACATCCTCGATCGCCCGCTCTTGTCCTAGCG 2525
|||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2363 CCAGATCCACAGCCTTGAAGATCTTAGGCACATCATCGATCGTCCGCTCTTGTCCTAGCG 2422
Query 2526 CTCTCAGCACCACCTTGTACTCAGTCTGAGAGATTTTCCCGTCTTTATCCAAATCAAACC 2585
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 2423 CTCTCAGCACCACCTTGTACTCTGTCTGAGAGATTTTCCCGTCTTTATCCGAATCAAACC 2482
Query 2586 TGCTGAAAACACGTCTCATCTCATTCACAGAAGGCTGAGAGAAGCCTCCTGGTCCAGGTG 2645
|||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 2483 TGCTAAAAACACGTCTCATCTCATTCACAGAAGGCTGAGAGAAACCTCTTGATCCAGGTG 2542
Query 2646 AAGATAGCCCTGAGGATTGTCTATCTCTAGAGAACATCCTTGAAGGCTTCCTCAACATCT 2705
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2543 AAGACAGCCCTGAGGATTGTCTATCTCTAGAGAACATCCTTGAAGGCTTCCTCAACATCT 2602
Query 2706 TGTTCTTGGAGAGCTTGTACTGCAACTCAAGAAAACTCACGTTTGACATGTCTGATTT 2763
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2603 TGTTCTTGGAGAGCTTATACTGCAACTCAAGAAAACTCACGTTTGACATGTCTGATTT 2660
Score = 682 bits (369), Expect = 0.0
Identities = 514/581 (88%), Gaps = 21/581 (4%)
Strand=Plus/Plus
Query 4 TTAACCCAACTCGGCCCAAAT-ATAATTTAATCAACAGGCCTAACAAGCCCAAAAGTGAA 62
||| ||||||||||||| || |||| ||||| |||||||||||||| ||||||||||||
Sbjct 1 TTAGCCCAACTCGGCCC--ATCATAAATTAATTAACAGGCCTAACAAACCCAAAAGTGAA 58
Query 63 ACTTATCATAATTTCATTTCCTGGGAATATTCTCATCCCCAATCTTATT--TTCACAGAC 120
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 59 TCTTATCATAATTTCATTTCCTGCGAATATTCTCATCCCCAATCTT-TTAATTCACAGA- 116
Query 121 TCTCACTAGGGTTTTGGTTTCTCCTATCAGGGTTTTAATCGTTCACCATTTCTCTCAGAG 180
||||||||||||||||||||| || | |||||||||||| ||| |||||||||||||||
Sbjct 117 -CTCACTAGGGTTTTGGTTTCT-CTCT-AGGGTTTTAATCTTTCTCCATTTCTCTCAGAG 173
Query 181 -AAAATGTCTTCTCTAATGGCCATTCGTTGCGCACGAACCCAGAATATCGTCACAATCGG 239
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||
Sbjct 174 AAAAATGTCTTCTCTAATGGCGATTCGTTGCGCACGAACCCCGAAAATCGTCACAATAGG 233
Query 240 CTCTCTCCTTCAGTTACGTTCTTCATTTCCCAGACTCTCCTCTCAATTCCACTTCTCCGG 299
||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 234 TTCTCTCCTTCATTTACGTTCTTCATTTCCCCGACTCTCCTCTCAATTCCACTCCTCC-G 292
Query 300 T-ACCCTAAACTCAATTCCGATCAAACACCTAAGCACATCCGCCGCCGCAAACGATTACC 358
| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 293 TGACCCTAAACTCAATTCCGATCAAAAACCTAAGCACATCCGCCGCCACTAACGATTACT 352
Query 359 ACCAGAATCCTCAATCTGGATCACCGTCTCAGCATCAACGCCCATATCCACCTCAAAGCT 418
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 353 ACCAGAATCCTCAATCTGGATCACCGTCTCAACAACAACGCCCGTATCCACCTCAAAGCT 412
Query 419 TCGATTCTCAGAATCAGACCAACACTAATCAACGAGTTCCACAAAGCCCTAATCAATGGT 478
| |||||||||| | | | || |||||| |||||||||||| |||||| ||||||
Sbjct 413 TTGATTCTCAGA----G-CTATCAG-AATCAAAGAGTTCCACAAAACCCTAACCAATGGA 466
Query 479 CTACTCAACACGGTGGTCAAA-TACCTCAATACGGTGGTCAAAATCCTCAACACGGGGGT 537
|| ||||| |||||||||||| | |||||| |||||||||||| |||||| |||| |||
Sbjct 467 CTCCTCAATACGGTGGTCAAAAT-CCTCAACACGGTGGTCAAAGGCCTCAATACGGTGGT 525
Query 538 CAAAGGCCTCCATACGGTGGTCAAAATCCTCAACAAGGTGG 578
||| |||||| |||||||||||| | |||||| | |||||
Sbjct 526 CAACGGCCTCAATACGGTGGTCAGAGGCCTCAATACGGTGG 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105014805465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5