BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15695.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931308 jgi|Araly1|931308|scaffold_303765.1 2364 0.0
> Ahg931308 jgi|Araly1|931308|scaffold_303765.1
Length=1519
Score = 2364 bits (1280), Expect = 0.0
Identities = 1435/1510 (95%), Gaps = 9/1510 (1%)
Strand=Plus/Plus
Query 95 GAAAATGATCGGCGGTGGTAGGGTTTATTGGGGGAAGAAGT-TAGATAAAGAGATGGAAG 153
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||
Sbjct 17 GAAAATGATCGGCGGTGGTAGGGTTTATTGGGGGAAAAAGTCT-GATAAAGAGATTGAAG 75
Query 154 ATGCGGCGGTTGTTGACGGTGGTGGATCTAACGGTGTTGTTGTGATCTTTGTTTGGAGCT 213
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 76 ATGCTGCGGCGGTTGACGGTGGTGGATCTAACGGTGTTGTTGTGATCTTTGTTTGGAGTT 135
Query 214 CGATTAACGAGAACCAGCTTATGAATTTCGTTGATCTTTATTCTTCTCTTGGTTGGAATT 273
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CGATTAACGAGAATCAGCTTATGAATTTCGTTGATCTTTATTCTTCTCTTGGTTGGAATT 195
Query 274 CTCTTGTTTGCCGCGCTGATTTTCTCACCGCGGTTTATCCTGAAATGGCTCTTTCTTTAG 333
|||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 196 CTCTTGTTTGTCGCGCTGATTTCCTCACTGCGTTTTATCCTGAAATGGCTCTTTCTTTAG 255
Query 334 CATTCCATCTTCTTTCTGAACTTGTTGAGGAGTTAAAGAGTAGACCATGTCCTGTTATCT 393
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 256 CATTCCACCTTCTTTCTGAACTTGTTGAGGAGTTAAAGACTAGACCATGTCCTGTTATCT 315
Query 394 TTCTAGCTTTCTCTGGTGCTCCTAAAGCTTGTATGTATAAAGT-TCTACAGGTGATCATG 452
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 316 TTCTAGCTTTCTCTGGTGCTCCTAAAGCTTGTATGTATAAAGTAT-TACAGGTGATCATG 374
Query 453 GATGATTGTGAAGCTCAAATTCATCCGGATGATAGCCAGTTGGTTAGAACCTGTCTTTCT 512
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 375 GGTGATTGTGAAGCTCAAATTCATCCAGATGATAGCCAGTTGGTTAGAAACTGTCTTTCT 434
Query 513 GGACATGTCTATGACTCTGGCCCGTTGGATTTTACGAGTGATTTGAATGTGAAATTCGCA 572
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 435 GGACATGTCTATGACTCTGGCCCGTTGGATTTTACGAGTGATTTGAATGTTAAATTTGCA 494
Query 573 CTACATCCCACCATACGACGAATGTCTGGTCCTTCTAGACTAGTATCTTGGGTGGCTAAA 632
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 495 CTACATCCCACCATACGACGAATGTCTGGGCCTTCTAGACTAGTATCTTGGGTGGCTAAA 554
Query 633 GGGATTTCTTCCGGGCTTGATGGTTTATATCTTACAAGATTTGAATCCCAACGTAGTGAG 692
||||||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 555 GGGATTTCTTCGGGGCTGGACGGTTTATATCTTACAAGGTTTGAATCCCAACGCAGTGAG 614
Query 693 TACTGGCAGGCCCTCTACTCATCGGTTGAAATTGGGGCTCCATATCTCATTTTGTGCTCC 752
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 615 TACTGGCAGGCCCTCTACTCATCAGTTGAAATTGGGGCTCCATATCTCATCTTGTGCTCG 674
Query 753 GAGAATGATGAACTTGCTCCTCTACAAGTAATTTCAAGCTTTACCCATCAATTGCAGGAA 812
|||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct 675 GAGAATGACGAACTTGCTCCTTTACAAGTAATTTCAAGCTTCACTCATCAATTGCAGGAA 734
Query 813 CTGGGAGGAGAAGTTAAGGTTGTCAAGTGGAAAAATTCTCCTCATGCAGGACACTACGCA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTGGGAGGAGAAGTTAAGGTTGTCAAGTGGAAAAATTCTCCTCATGCAGGACACTACGCA 794
Query 873 CATAACCCTATACAATACCGGGCTGTTATCTCCAACTTTCTGGAGAAAGCCATATCAGTT 932
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 795 CATAACCCTATACAGTACCGGGCTGTTATCTCCAACTTTCTAGAGAAAGCCATGTCAGTT 854
Query 933 CACTTACATAAAATCCGGCAGCTCGGAGAAAGAGCTCACACGCATGATGAAATCTCTGAG 992
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 855 CACTTACAGAAAATCCGGCAGCTCGGAGAAAGAGCTCACACACATGATGAGATCTCTGAG 914
Query 993 TTAATATGCGACCTTCAGAAAGTTGCTGTGAACTCTAACCAAAGCCTAAGAAGAGTAGCC 1052
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 915 TTAATATGCGACCTTCAGAAAGTCGCTGTGAACTCTAACCAAAGCCTAAGAAGAGTAGCC 974
Query 1053 ACTGGGCCATGTGACCACTTTTTCTTACCTAGCTCAGCACCGTATCAAAGCAACAGCAAC 1112
||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||| |
Sbjct 975 ACTGGGCCAAGTGACCACTTTTTCTTACCCAGCTCAGCGCCGTATCAAAGTAACAGCAGC 1034
Query 1113 AACAGCGATCCATCATCTTCACAAGAAGAACAGAGAGAAAGATCGTCCTTCCGCCCACTC 1172
| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1035 AGCAACGACCCATCATCTTCACAAGAAGAACAGAGAGAAAGATCTTCCTTCCGCCCACTC 1094
Query 1173 CAACCAACGAGCATAAACGCTCACAGCGTACTCGGGCAATTCCTATTCGACTCATGTGTT 1232
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1095 CAACCAACTAGTATAAACGCTCACAGCGTTCTCGGGCAATTCCTATTCGACTCATGTGTT 1154
Query 1233 CCAAAGAACATCGAAGGATGGGATATCAGATTTGCGGGTTGTCTCAACGGTCAACCATAT 1292
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 1155 CCAAAGAACATCGAAGGATGGGATATCAGATTCGCGGGTTCTCTCAACGGTCAACCGTAT 1214
Query 1293 GCCACGTCCTCCTCCCGTAAGAACTCAAATCTTGGTTTTAAGAAACGCTTTTTCCGTTCA 1352
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1215 GCCACGTCCTCCTCCCGTAAGAATTCAAATCTTGGTTTTAAGAAACGCGTTTTCCGTTCA 1274
Query 1353 AGACTATGAATGAAATCGCAGAAACTGAGCAAGGTACTGGGTGATGTGAACCATATGGGG 1412
||||||||||||||||||| |||||||||| |||| | | || |||||||||||||||||
Sbjct 1275 AGACTATGAATGAAATCGCTGAAACTGAGCCAGGTGC-GCGTAATGTGAACCATATGGGG 1333
Query 1413 AAGTAGTAGAGAGATGTTTAGAAAGGAAGAGGATGTATAGGATGCGGAAGATGTATATAG 1472
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1334 AAGTAGTAGAGAGATGTTTAGAAAAGAAGAGGATGTATAGGATGCGGAAGATGTAAATAG 1393
Query 1473 AGTGACGATTACTACAACCTAACATACATGAGGGATCTTCAAATGTTGTGTGTACAAGTC 1532
||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1394 AGTGACGATTACTAC----TAACATACATGAGTGATCTTCGAATGTTGTGTGTACAAGTC 1449
Query 1533 TCAAAAATAAGTCTGTATAGATAGACATATCTGTTACTTGTCTACACGAAAATGTGTTAA 1592
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1450 TCAAAAATAAGTCTGTATAGATAGACATATCTGTTACTTGTGTACACGAAAATGTGTTAA 1509
Query 1593 TAACACACTG 1602
||| ||||||
Sbjct 1510 TAAAACACTG 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5