BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15710.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925701 jgi|Araly1|925701|scaffold_201262.1 359 3e-98
> Ahg925701 jgi|Araly1|925701|scaffold_201262.1
Length=997
Score = 359 bits (194), Expect = 3e-98
Identities = 296/345 (86%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 494 TGTTCGCATATATCATTTTCTTCGTCTACAACAAGAAAGAAAACAAATACTTTACCATTC 553
|||| |||||| | | ||||||||||| |||||||||| ||||||||||||||| || |
Sbjct 304 TGTTTGCATATCTTGTGTTCTTCGTCTATAACAAGAAAGCAAACAAATACTTTACTATCC 363
Query 554 AAGATGTTGAAGTAAAGCGGTTCAATGCATTAAGAACGGTGTGGGGATTATCACAAGTTC 613
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 364 AAGATGTTGAAGTAAAGCGGTTCAATGCCTTAAGAACGGTGTGGGGATTACCACAAGTGC 423
Query 614 TTTCACTTGAGA-CATTCAATGACCTTGAAAATGGATACA-CATTTGAGGGAGAACAATG 671
||||||||| || | |||||||||| | ||||||||| || | || ||||||||||| ||
Sbjct 424 TTTCACTTG-GAACTTTCAATGACCCTAAAAATGGATTCATC-TTCGAGGGAGAACATTG 481
Query 672 TGAGTTTGGTGTTGATGTGATGGTTGCTTCACCCATTACCAAGTGGGAAGTCGTCTCTTT 731
||||||||||||||||||||||||| || |||| ||| ||||||||||||||| |||||
Sbjct 482 TGAGTTTGGTGTTGATGTGATGGTTTCTCCACCTTTTAACAAGTGGGAAGTCGTTTCTTT 541
Query 732 TGATGAGAAACTCGATATTCTCAAGTTCTCCTGGAGTGTTAAGGATTTCTCGGTGCTTAA 791
|||||| |||||| ||| || ||||||||| |||| ||||||| |||||||| |||| |
Sbjct 542 TGATGAAAAACTCTATAATCCCAAGTTCTCGTGGAATGTTAAGAATTTCTCGATGCTGAG 601
Query 792 AGAGGAG-TTCTATGTATCAGAA-AGATTTTCAATGGGAGGAAGA 834
|||| | || || |||| || || ||| ||||||||||||||
Sbjct 602 AGAGAATCTT-TACATATCC-AATAGCTTTCCAATGGGAGGAAGA 644
Score = 213 bits (115), Expect = 2e-54
Identities = 208/252 (83%), Gaps = 10/252 (4%)
Strand=Plus/Plus
Query 257 ATTCTACAATTGTGAATAACTTGAGAGAACATCCTCCTTCTTCTTACTCCCTCAAGATCA 316
||||||||| |||| | | || |||||| ||||||||||||||| |||| ||||||||||
Sbjct 40 ATTCTACAAATGTGGAGATCTGGAGAGAGCATCCTCCTTCTTCTAACTCTCTCAAGATCA 99
Query 317 ACAAACTTTCTC-AA-CTT-ACTTTTGACAAATATGAATCTCATCGTTTCTTGTCCGGTG 373
||| || |||| || ||| || ||| ||| |||| | |||||||||||||||||
Sbjct 100 ACACAC--TCTCAAAGCTTAAC-AGTGATGTATACAAATCCCGTCGTTTCTTGTCCGGTG 156
Query 374 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAACGAAAAAGACAAAGGAAGTGGAT 433
||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||
Sbjct 157 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAATGAAAAGGACAATGGAAATGGAT 216
Query 434 TTATCTCTATGTATGTGGAATTTGACAACACAAAAGTC-TCGTCTACATCACCAA-TGGA 491
|||| || |||||||||||||||| |||||| | | ||||||| |||||| || |
Sbjct 217 TTATTTCAATGTATGTGGAATTTGGTGACACAAGCCTTAT-GTCTACACCACCAAGTG-A 274
Query 492 GGTGTTCGCATA 503
||| || |||||
Sbjct 275 GGTATTTGCATA 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5