BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15710.1 Length=1098 Score E Sequences producing significant alignments: (Bits) Value Ahg925701 jgi|Araly1|925701|scaffold_201262.1 359 3e-98 > Ahg925701 jgi|Araly1|925701|scaffold_201262.1 Length=997 Score = 359 bits (194), Expect = 3e-98 Identities = 296/345 (86%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 494 TGTTCGCATATATCATTTTCTTCGTCTACAACAAGAAAGAAAACAAATACTTTACCATTC 553 |||| |||||| | | ||||||||||| |||||||||| ||||||||||||||| || | Sbjct 304 TGTTTGCATATCTTGTGTTCTTCGTCTATAACAAGAAAGCAAACAAATACTTTACTATCC 363 Query 554 AAGATGTTGAAGTAAAGCGGTTCAATGCATTAAGAACGGTGTGGGGATTATCACAAGTTC 613 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | Sbjct 364 AAGATGTTGAAGTAAAGCGGTTCAATGCCTTAAGAACGGTGTGGGGATTACCACAAGTGC 423 Query 614 TTTCACTTGAGA-CATTCAATGACCTTGAAAATGGATACA-CATTTGAGGGAGAACAATG 671 ||||||||| || | |||||||||| | ||||||||| || | || ||||||||||| || Sbjct 424 TTTCACTTG-GAACTTTCAATGACCCTAAAAATGGATTCATC-TTCGAGGGAGAACATTG 481 Query 672 TGAGTTTGGTGTTGATGTGATGGTTGCTTCACCCATTACCAAGTGGGAAGTCGTCTCTTT 731 ||||||||||||||||||||||||| || |||| ||| ||||||||||||||| ||||| Sbjct 482 TGAGTTTGGTGTTGATGTGATGGTTTCTCCACCTTTTAACAAGTGGGAAGTCGTTTCTTT 541 Query 732 TGATGAGAAACTCGATATTCTCAAGTTCTCCTGGAGTGTTAAGGATTTCTCGGTGCTTAA 791 |||||| |||||| ||| || ||||||||| |||| ||||||| |||||||| |||| | Sbjct 542 TGATGAAAAACTCTATAATCCCAAGTTCTCGTGGAATGTTAAGAATTTCTCGATGCTGAG 601 Query 792 AGAGGAG-TTCTATGTATCAGAA-AGATTTTCAATGGGAGGAAGA 834 |||| | || || |||| || || ||| |||||||||||||| Sbjct 602 AGAGAATCTT-TACATATCC-AATAGCTTTCCAATGGGAGGAAGA 644 Score = 213 bits (115), Expect = 2e-54 Identities = 208/252 (83%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 257 ATTCTACAATTGTGAATAACTTGAGAGAACATCCTCCTTCTTCTTACTCCCTCAAGATCA 316 ||||||||| |||| | | || |||||| ||||||||||||||| |||| |||||||||| Sbjct 40 ATTCTACAAATGTGGAGATCTGGAGAGAGCATCCTCCTTCTTCTAACTCTCTCAAGATCA 99 Query 317 ACAAACTTTCTC-AA-CTT-ACTTTTGACAAATATGAATCTCATCGTTTCTTGTCCGGTG 373 ||| || |||| || ||| || ||| ||| |||| | ||||||||||||||||| Sbjct 100 ACACAC--TCTCAAAGCTTAAC-AGTGATGTATACAAATCCCGTCGTTTCTTGTCCGGTG 156 Query 374 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAACGAAAAAGACAAAGGAAGTGGAT 433 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||| Sbjct 157 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAATGAAAAGGACAATGGAAATGGAT 216 Query 434 TTATCTCTATGTATGTGGAATTTGACAACACAAAAGTC-TCGTCTACATCACCAA-TGGA 491 |||| || |||||||||||||||| |||||| | | ||||||| |||||| || | Sbjct 217 TTATTTCAATGTATGTGGAATTTGGTGACACAAGCCTTAT-GTCTACACCACCAAGTG-A 274 Query 492 GGTGTTCGCATA 503 ||| || ||||| Sbjct 275 GGTATTTGCATA 286 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40905889941 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5