BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15730.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480426 jgi|Araly1|480426|fgenesh2_kg.3__3127__AT2G15730.1 2167 0.0
Ahg944461 jgi|Araly1|944461|scaffold_700690.1 1044 0.0
> Ahg480426 jgi|Araly1|480426|fgenesh2_kg.3__3127__AT2G15730.1
Length=1433
Score = 2167 bits (1173), Expect = 0.0
Identities = 1362/1449 (94%), Gaps = 29/1449 (2%)
Strand=Plus/Plus
Query 104 TTTTTAATTTGTATGGGCTGATCAGAAAAAAGCCACTTTGTGTTTTCTTTTTTAGCTGGA 163
||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 1 TTTATAATTTGTATGGGCTGATCAGAGAAAAGCCACTTTGTTTTTTTTTTTTTAGCTGGA 60
Query 164 CGGTGTCTGAATCATTCAATGCCTTtctcttctctacctttctaaatctctctctctcta 223
| ||||||||| | || || || ||| | |||||| | ||||||||||||
Sbjct 61 CTGTGTCTGAA--A-TC--TG--AATC-ATTCAATGCCTTTC----T-TCTCTCTCTCTA 107
Query 224 tctctcCATCGAAG---CAGCCATGGGCGACGAACACTCTCTCATCCCAAAGGATAGTTT 280
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 TCTCTCCCTCGAAGCAACAGCCATGGGCGACGAACACTCTCTCATCCCAAAGGATAGTTT 167
Query 281 TGTCTTCAAGCTTCCTAAAAAATCACCACTTGTGTTGAGAACGGTTGTTCTCTTGTTTGT 340
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 168 TGTCTTCAAGCTTCCTAAAAAATCACCACTTGTGTTAAGAACGGTTGTTCTCTTGTTTGT 227
Query 341 GATGGTTTGTACTGTTTATATTTGCTCTATTTGTTTAAAGCAAATTGGTGTTGTCCCTAG 400
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 228 GATGGTTTGTACTGTTTATATTTGCTCTATTTGTTTGAAGCAAATTGGTGTTGTCCCTAG 287
Query 401 TGCTGGATTCTTGAATGTTGAAGTGTTTGAGAGACCTTGTCCTGAGCCTAACATTCAACC 460
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 288 TGCTGGATTCTTGAATGTTGAAGTGTTTGAGAGACAGTGTCCTGAGCCTAACATTGAACC 347
Query 461 TTGGGACATTCCTTATGTTCACTATCCTAAACCTAAGACCTATAGCAGGGAGGAATGTTC 520
||||||||| |||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 348 TTGGGACATACCTTATGTCCATTATCCTAAACCTAAGACTTACAGCAGGGAGGAATGTTC 407
Query 521 GTGCAATCCCGTTAGGTATTTTGCTATTCTCTCGATGCAGAGATCTGGTAGCGGTTGGTT 580
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 408 GTGCAATCCCGTTAGGTATTTTGCTATTCTCTCGATGCAGAGATCTGGTAGCGGCTGGTT 467
Query 581 TGAGACTTTACTTAACAATCATACTAACATTAGCTCGAACGGGGAGATCTTTTCGGTTAA 640
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 468 TGAGACTTTACTTAACAATCATACTAACATAAGCTCGAACGGGGAGATCTTTTCGGTTAA 527
Query 641 AGATAGGAGGGCTAATGTGTCGACCATTTTTGAGACGTTGGACAAAGTATATAATTTAGA 700
|||||||||||||||||||||||| ||||||||||| ||||||||| | ||||| |||||
Sbjct 528 AGATAGGAGGGCTAATGTGTCGACTATTTTTGAGACCTTGGACAAATTGTATAACTTAGA 587
Query 701 TTGGTTGAGTAGTGCTTCTAAGAACGAGTGTACATCTGCTGTTGGTTTGAAATGGATGCT 760
|||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 588 TTGGTTGAGTAGTGCTTCTAAGAACGAGTGCACCTCTGCCGTTGGATTGAAGTGGATGCT 647
Query 761 TAATCAGGGTCTAATGAAAAACCATGAAGAGATAGTAGAATACTTCAAAACCCGAGGCGT 820
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TAATCAGGGTCTAATGAAACACCATGAAGAGATAGTAGAATACTTCAAAACCCGAGGCGT 707
Query 821 GTCTGCTATTTTCCTCTTTAGAAGAAACCTCTTGCGCCGGATGATTTCAGTTCTTGCAAA 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GTCTGCTATTTTCCTCTTTAGAAGAAACCTCTTGCGCCGGATGATTTCAGTTCTTGCAAA 767
Query 881 CTCTTACGATAGAGATGCTAAGCCATTAAACGGAACTCACAAGTCCCATGTCCATTCCCC 940
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 768 CTCTTACGATAGAGATGCTAAGCCATTAAACGGTACTCACAAGTCCCACGTCCATTCCCC 827
Query 941 TAAAGAGGCTGAGATATTGGCGCGCTACAAACCATTGATCAACACGAGTCTTTTGATACC 1000
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 828 TAAAGAGGCTGAGATATTGGCGCGCTACAAACCATTGATCAACACGAGCCTTTTGATACC 887
Query 1001 TGATCTGAAGCAGGTTCAAGAGATGACTTCAAAAGCACTTGCTTACTTTAACACCACGCG 1060
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 888 TGATCTGAAGCAGGTTCAAGAGATGACTTCAAAGGCACTTGCTTACTTTAATACCACCCG 947
Query 1061 GCATATCTTCCTCTACTACGAAGATGTTGTCAAGAACCGCACCAAACTAGACGATGTACA 1120
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 948 GCATATTTTCCTCTACTACGAAGATGTTGTCAAGAACCGCACTAAACTAGATGATGTGCA 1007
Query 1121 AGAGTTTCTGAAGGTCCCGAAACTAGATTTAAAGAGTAGGCAAGTGAAGATTCATCATGG 1180
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1008 AGAGTTTCTAAAGGTCCCGAAACTCGATTTAAAGAGTAGGCAAGTGAAGATTCATCATGG 1067
Query 1181 TCCGTTGTCACAACACGTACAAAATTGGGAAGAGGTGCAAA-AGACACTGAAAGGGACCG 1239
||| |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1068 TCCATTGTCAAAACACGTACAAAATTGGGAAGAGGTGCAAACA-ACACTGAAAGGGACCG 1126
Query 1240 GTTTCGAAAACTTTCTACTTGAAGATTACCGCAGGTGAAATTAACACTAGGAGAGAGTGA 1299
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1127 GTTTCGAAAACTTTCTACTTGAAGATTACCGCAGGTGAATTTAACTCTAGGAGAGAGTGA 1186
Query 1300 TGTACATAAACCTCTCTCGCAGAAAGGTCAGACCAACTTGTAGGAAAGTTTTGGTAGTGC 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 TGTACATAAACCTCTCTCGCAGAAAGGTCAGACCAACTTGTAGGAAAGTTTTGGTAGTGC 1246
Query 1360 CACGAACAGGttttgcaagtctttttatcttttagttttctctgttttt--c----tttC 1413
||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 1247 CACGAACTGGTTTTGCAAGTCTTTT-ATCTTTTAGTTTTCTCTGTTTTTTTCCAAGTTTT 1305
Query 1414 ---CAAGTTGTTAGCTCTTAATTCGATTCATTCTTTATCAAGGAACTAAGAGTTCTATTG 1470
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1306 AATCAAGTTGTTAGCTCTTAATTCGATTCATTCTTTACCAGGGAACTAAGAGTTCTATTG 1365
Query 1471 TAATCAGAAACACGATCCGGTTCATCCTCTTATTTGCTTCTAATGATTAGAACAAAGAAC 1530
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1366 TAATCAGAAACAC-ATCTGGTTCATCCTCTTATTTACTTCTAATGATTAGAACAAAGAAC 1424
Query 1531 AAAGATTTG 1539
||| |||||
Sbjct 1425 AAACATTTG 1433
> Ahg944461 jgi|Araly1|944461|scaffold_700690.1
Length=1515
Score = 1044 bits (565), Expect = 0.0
Identities = 924/1094 (84%), Gaps = 38/1094 (3%)
Strand=Plus/Plus
Query 179 TCAATGCCTTtctcttctctacctttctaaatctctctctctctatctctcCATCGAAG- 237
|||||| |||| | |||| | ||||||| ||||||| ||||||||||| |||| |
Sbjct 406 TCAATGTCTTTATGTTCTGTTCCTTTCT-GATCTCTCAGTCTCTATCTCT--ATCG-CGA 461
Query 238 CAGCCATGGGCGACGAACAC-TCTCTCATCCCAAAGGATAGTTTTGTCTTCAAGCTTCCT 296
||||||||| ||| | || | ||| || |||| |||||| |||||||||| |||||||||
Sbjct 462 CAGCCATGGCCGAAG-ACCCTTCTTTCCTCCCCAAGGATGGTTTTGTCTTGAAGCTTCCT 520
Query 297 AAAAAATCAC-CACTTGTGTTGAGAACGGTTGTTCTCTTGTTTGTGATGGTTTGTACTGT 355
||||| || | ||||||| ||||||| ||| |||||| | ||||| ||||| ||| ||||
Sbjct 521 AAAAAGTC-CTCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATGGTCTGTGCTGT 579
Query 356 TTATATTTGCTCTATTTGT-TTAAAGCAAATTGGTGTT-GTCCC-TAGTGCTGGATTCTT 412
|| |||||||| |||||| || |||||||| || ||| | ||| | | ||| |||||
Sbjct 580 GTACATTTGCTCGATTTGTCTT-AAGCAAATAGGAGTTAG-CCCAAACT-ATGGTTTCTT 636
Query 413 GAATGTTGAAGTGTTTGAGAGACCTTGTCCTGAGCCTAACATTCAACCTTGGGACATTCC 472
||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
Sbjct 637 GAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATTGAACCGTGGGACATT-C 695
Query 473 T-TATGTTCACTATCCTAAACCTAAGACCTATAGCAGGGAGGAATGTTCGTGCAATCCC- 530
| | ||| || || |||||||| ||||| |||| |||||| |||||||| ||| | |||
Sbjct 696 TATTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTGCCA-CCCG 754
Query 531 GTTAGGTATTTTGCTATTCTCTCGATGCAGAGATCTGGTAGCGGTTGGTTTGAGACTTTA 590
|||||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 755 GTTAGGTACTTTGCGATTCTCTCGATGCAGAGATCTGGCAGTGGCTGGTTTGAGACTTT- 813
Query 591 CTT-AACAATCATACTAACATTAGCTCGAACGGGGAGATCTTTTCGGTTAAAGATAGGAG 649
|| ||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 814 GTTAAACAATCATACCAACATAAGCTCGAACGGGGAGATCTTTTCTGTGAAAGATAGGAG 873
Query 650 GGCTAATGTGTCGACCATTTTTGAGACGT-TGGACAAAGTATATAATTTAGATTGGTTGA 708
||||||||| || |||||||||||||| | | |||||||| |||||| |||| |||||||
Sbjct 874 GGCTAATGTTTCCACCATTTTTGAGAC-TCTTGACAAAGTCTATAATCTAGACTGGTTGA 932
Query 709 GTAGTGCTTCTAAGAACGAGTGTACATCTGCTGTTGGTTTGAAATGGATGCTTAATCAGG 768
||||||| |||||||||||||| || ||||||||||| || || ||||||||||||||||
Sbjct 933 GTAGTGCCTCTAAGAACGAGTGCACTTCTGCTGTTGGCTTCAAGTGGATGCTTAATCAGG 992
Query 769 GTCTAATGAAAAACCATGAAGAGATAGTAGAATACTTCAAAACCCGAGGCGTGTCTGCTA 828
|| |||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 993 GTTTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTCTGCGA 1052
Query 829 TTTTCCTCTTTAGAAGAAACCTCTTGCGCCGGATGATTTCAGTTCTTGCAAACTCTTACG 888
||||||| || |||| |||||| ||||| || ||||| ||||| |||||||||||||| |
Sbjct 1053 TTTTCCTATTCAGAAAAAACCTATTGCGTCGCATGATATCAGTACTTGCAAACTCTTATG 1112
Query 889 ATAGAGATGCTAAGCCATTAAACGGAACTCACAAGTCCCATGTCCATTCC-CCTAAAGAG 947
| ||||||||||||| ||||||||||||||||||||| || |||||| || |||||
Sbjct 1113 ACAGAGATGCTAAGCTATTAAACGGAACTCACAAGTCTCACACCCATTCGGCC-AAAGAA 1171
Query 948 GCTGAGATATTGGCGCGCTACAAACCATTGATCAACACGAGTCTTTTGATAC-CTGATCT 1006
||||||||||||||| | ||||| ||| |||||||||| | ||||| ||| | || ||
Sbjct 1172 GCTGAGATATTGGCGGGTTACAAGCCAATGATCAACACAACACTTTTAATAAAC-GAGCT 1230
Query 1007 GAAGCAGGTTCAAGAGATGACTTCAAAAGCACTTGC-TTACTTTAACACCACGCGGCATA 1065
||| ||| ||||||| ||||||| ||||| |||| ||||||||| ||||| || ||||
Sbjct 1231 GAAACAGATTCAAGAAATGACTTTGAAAGC-CTTGGATTACTTTAATACCACTCGACATA 1289
Query 1066 TC-TTCCTCTACTACGAAGATGTTGTCAAGAACCGCACCAAACTAGACGATGTACAAGA- 1123
|| || ||||||||||||||||||||||||||| ||| | ||||||||||||||| ||
Sbjct 1290 TCCTTG-TCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACA-GAA 1347
Query 1124 GTTTCTGAAGGTCCCGAAAC-TAGATTTAAAGAGTAGGCAAGTGAAGATTCATC-ATGGT 1181
|||||| |||||||| |||| || | ||||||||||||||||||||||||||| | |||
Sbjct 1348 GTTTCTAAAGGTCCCAAAACGTA-AGTTAAAGAGTAGGCAAGTGAAGATTCATGGA-GGT 1405
Query 1182 CCGTTGTCACAACACGTACAAAATTGGGAAGAGGTGCAAAAGACACTGAAAGGGACCGGT 1241
| ||||||||||| ||||| |||||||||||||| |||| ||||| ||||| ||| |
Sbjct 1406 TCATTGTCACAACATGTACAGAATTGGGAAGAGGTCCAAACCACACTTAAAGGAACCAAT 1465
Query 1242 TTCGAAAACTTTCT 1255
|||||||| |||||
Sbjct 1466 TTCGAAAA-TTTCT 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5