BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15740.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931310 jgi|Araly1|931310|scaffold_303767.1 1256 0.0
Ahg931746 jgi|Araly1|931746|scaffold_304203.1 638 0.0
> Ahg931310 jgi|Araly1|931310|scaffold_303767.1
Length=1033
Score = 1256 bits (680), Expect = 0.0
Identities = 893/995 (90%), Gaps = 17/995 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCTATGCCAAATAAGTTCAATCCTCACTGTGATG--A-TAACAATCGTGGTTTT 57
||||||||||| |||||||||||||||| ||| ||||||| | ||||||||||||||||
Sbjct 21 ATGTCTTCTATTCCAAATAAGTTCAATCTTCATTGTGATGATACTAACAATCGTGGTTTT 80
Query 58 TCCTCCATCCAAATGAATCAAAATTCTC-AAATGGTTCATTCGAGGTTCATTACTTCGGA 116
||||||| ||||||||||||||||| | |||| ||||| |||| ||||||||| |||||
Sbjct 81 TCCTCCAAACAAATGAATCAAAATTC-CAAAATAGTTCAATCGATGTTCATTACCTCGGA 139
Query 117 TCACACAAACCATGGTGATCTGTTTTCATCATCTCCTTCTTTTTCTTGTTTTCATAATTC 176
||||||||||||||||||| ||||||| |||||||||||||| ||| |||||| |||||
Sbjct 140 TCACACAAACCATGGTGATTTGTTTTCCTCATCTCCTTCTTTAACTTTTTTTCAAAATTC 199
Query 177 ACATGCCTCTTCATCTTCATTTGGATTCCAAAATTCACATGTGGAAAATCATATGATGAA 236
||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 200 ACATGTTTCTTCATCTTCATTTGGATTTAAAAATTCACATGTGAAAAATCAAATGATGAG 259
Query 237 GAGAAACATAATTTCTGATGACAATTATTTTTCTATCACAAACAATCCTCATTTTACTC- 295
||||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| |
Sbjct 260 GAGAAACATAATTTCTGGTGACAATTATTTTCCTATAAAAAACAATCCTCATTTTAC-CA 318
Query 296 GAGTTTCTTTCACACAAACCATTACAAACAAATTTACAGCCATTGTTCCTACTAATACAC 355
|||||||||||||||||| ||||||||| | | ||| || |||||||||||||||||||
Sbjct 319 GAGTTTCTTTCACACAAAGCATTACAAATAGGTATACCGCTATTGTTCCTACTAATACAC 378
Query 356 TTGACGCTGTACAATATGATGCTCAACGTGTCAAACGTGCCATGAATCCCAAAACCAATA 415
||||| ||||||||||||| |||||||||||||||||||||| || ||||||| ||||
Sbjct 379 TTGACATTGTACAATATGATATTCAACGTGTCAAACGTGCCATGTATTCCAAAACTAATA 438
Query 416 TTTGGAATCCTATATTTTCTCCTCCAAATACTTTTGATAAACAATGCGAATTTTTGAATC 475
|||||||||||| ||||| ||||||||||| |||||||||||| || ||| |||||||||
Sbjct 439 TTTGGAATCCTAAATTTTTTCCTCCAAATATTTTTGATAAACAGTGTGAACTTTTGAATC 498
Query 476 CTAAACCTCTTAATGTCATTTTTCCGAGTCAAAATTCTGCATATCCTCAACATTTAGACA 535
|||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct 499 CTAAACCTCTTAATGTCATTGTTCCGCGTCAAGATTCTGCATATTCTCAACATTTAGACA 558
Query 536 TGTTTTCCTTGTCATCAAAGCACAATC-ATGATCAACGTGTT-CTCCAAGATGG-TCGTT 592
||||||| ||||||||||| ||||| | | | ||||||||| || ||| |||| || ||
Sbjct 559 TGTTTTCATTGTCATCAAAACACAA-CTACAACCAACGTGTTCCT-CAATATGGTTC-TT 615
Query 593 CTATGAAGAAAATCTTGAAACCAACCATA-TTTTTT-GAAGCAACTACTGATTACATTGA 650
| |||||||||||||||||||||||| | |||||| ||| ||| ||||||||| |||||
Sbjct 616 TTTTGAAGAAAATCTTGAAACCAACCA-AGTTTTTTGGAA-CAAGTACTGATTATATTGA 673
Query 651 GTCTCAAGAAAACGAGAAAAGTAACAATGATCACAATGATGGTAGGACACATAGTCTACC 710
|||| ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 674 GTCTGAAGAAAATGAGAAAAGTAACGATGATCAGTATGATGGTCGGACACATAGTCTACC 733
Query 711 ATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGCGTCTTTAATACTTCTCA 770
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 734 ATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGCGTATTCGATACTTCTCA 793
Query 771 AAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAACAAGCGAAGAAAGAGAACA 830
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 794 AAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAACGAGCGAAGAAAGAGAACA 853
Query 831 GAGAATTCGTGCAAAGAACAAAAGAAAATTTTGTAAACTAAATCGTGAAATTAATGGTGA 890
||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 854 TAGACTTCGTGCAAAGAACAAAAGAAAATATTGTAAACTAAATCACGAAATTCATGGTGA 913
Query 891 GCCTCAAAAGACCAAACAAGAGGATGTGGCCAACAACAGTGAAAAAAGTGACGATAAAAC 950
| |||||||| | |||||||||||||| | ||||||| ||||||||| |||||||||| |
Sbjct 914 GTCTCAAAAGTCTAAACAAGAGGATGTAGTCAACAACGGTGAAAAAAATGACGATAAAGC 973
Query 951 TTTCCAACATCTTGTGGTCGTAAAAGAAGAGCTTG 985
|||||||||||||||| ||||||||||||||||||
Sbjct 974 TTTCCAACATCTTGTGATCGTAAAAGAAGAGCTTG 1008
> Ahg931746 jgi|Araly1|931746|scaffold_304203.1
Length=1044
Score = 638 bits (345), Expect = 0.0
Identities = 766/964 (79%), Gaps = 49/964 (5%)
Strand=Plus/Plus
Query 54 TTTTTCCTCCATCCAAATGAATCAAAATTCTCAA-ATGGTTC-ATTCGAGGTTCATTACT 111
||||| | ||||| |||||||||| || || ||| ||||||| | |||| ||||| | |
Sbjct 81 TTTTTTC-CCATCGAAATGAATCACAACTC-CAAGATGGTTCGA-TCGATGTTCACTGCA 137
Query 112 TCGGATCACACAAACCATGGTGATCTGTTTTCATCATCTCCTTCTTTTTCTTGTTTTCAT 171
| ||| | |||||| ||||| ||||||| || ||||||||| ||||||||| ||
Sbjct 138 TATGATTGTTCGAACCATAGTGATTTGTTTTCGTCTTCTCCTTCTATTTCTTGTTACCAA 197
Query 172 AATTCACATGCCTCTTCATCTTCATTTGGATTCCAA-AATTCACATGTGGAAAATCATAT 230
|||||||||| |||||||||||| |||||||| || ||||||||| || || |||||
Sbjct 198 AATTCACATGTCTCTTCATCTTCCTTTGGATT-TAACAATTCACATATGCCCAACCATAT 256
Query 231 GATGAAGAGAAACA-T-A--A--TTTCTGATGA-CAATTATTTTTCTATCACAA-ACAAT 282
||||| |||||||| | | | |||||| | | | ||||||| |||| | || | |||
Sbjct 257 GATGAGGAGAAACATTGATTATGTTTCTGGT-ACCGATTATTTGCCTATTA-AAGATAAT 314
Query 283 CCTCATTTTACTCGAGTTTCTTTCACACAAACCATTACAAACAAATTTACAGCCATTGTT 342
|||||| ||||| ||||||||||||| |||||||| || || | | || | |||| |
Sbjct 315 CCTCATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCT 374
Query 343 CCTACTAATACACTTGACGCTGTACAATATGATGCTCAACGTGTCAAACGTGCCATGAAT 402
||| | ||||||||||| ||||| ||||||||| | |||||||||||||||||||| ||
Sbjct 375 CCTGCCAATACACTTGATGCTGTTCAATATGATATTGAACGTGTCAAACGTGCCATGGAT 434
Query 403 CCCAAAACCAATATTTGGAATCCTATATTTTC-TCCTCCAAATACTT-TTGATAAACAAT 460
| ||| |||||||||||||||||| ||| | | |||||||| || ||||||||||||
Sbjct 435 TCTAAACCCAATATTTGGAATCCTA-CTTTACATTCTCCAAAT-TTTCTTGATAAACAAT 492
Query 461 GCGA-ATTTTTGAATCCTAAACCTCTTAATGTCATTTTTCCGAGTCAAAATTCTGCATAT 519
|| | | || ||| |||| | ||||||||||||||||| ||| | |||||||||| | ||
Sbjct 493 GCCAGA-TTCTGACTCCTGAGCCTCTTAATGTCATTTTCCCGCGCCAAAATTCTGTAGAT 551
Query 520 CCTCAACATTTAGACATGTTT-TCCTTGTCATCAAAGCACAATCATGATCAACGT-GTTC 577
| |||||||||| || | ||| ||||||||||| ||||| || ||||||||| | ||
Sbjct 552 CGTCAACATTTAAAC-TTTTTCTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTG 610
Query 578 TCCAAGATGGTCGTTCTAT-GAAGAAAATCT-TGAAACCAACCATATTTTT-TGAAGCAA 634
| || || ||||| ||| | ||| ||| ||| | |||||||||| ||||| || ||
Sbjct 611 T-CATGAGGGTCGATCTTTGGAA-AAAGTCTCT-AAACCAACCA-CTTTTTCCAAAAAAA 666
Query 635 CTACTGATTACATTGAGTCTCAAGAAAACGAGAAAAGTAACAATGATCACA-ATGATGGT 693
||| |||||| || | | | || |||||||||||| | || ||||||| | ||||||||
Sbjct 667 CTAATGATTATATACATTGTGAAAAAAACGAGAAAATTGACGATGATCA-ATATGATGGT 725
Query 694 AGGACACATAGTCTACCATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGC 753
|||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 726 CGGACACATAGTCTACCGTATGAGAAATACGGTCCATATACATGTCCCAAATGCAACGGT 785
Query 754 GTCTTTAATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAAC- 812
|| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 786 GTATTTAATACTTCTCAACAATTTGCTGCACATATGTCATCTCACTACAAGGGCGAGACG 845
Query 813 AAGCGAAGAAAGAGAACAGAGAATTCGTGCAAAGAACAAAAGAAAATTTTGTAAACTAAA 872
|| | |||||||||| || ||| ||||||||| ||| |||||||||| | ||||| | ||
Sbjct 846 AA-CAAAGAAAGAGATCAAAGATTTCGTGCAAGGAATAAAAGAAAATATCGTAAATTGAA 904
Query 873 TCGTGAAAT-TAATGGTGAGCCTCAAAAGACCAAACAAGAGGATGTG-GCCAACAACAG- 929
|| |||| | || ||| || ||||||||| ||||| ||| |||| | | || | ||
Sbjct 905 TCCTGAAGTGTA-TGGGGAATCTCAAAAGATCAAACCAGAAGATG-GAGTTAATAG-AGG 961
Query 930 T-GAAAAAAGTGACGATAAAACT-TTCCAACATCTTGTGG-TCGTAAAAGAAGAGCTTGT 986
| ||| || |||||| ||||| ||| || |||||| || |||||||||||||| ||||
Sbjct 962 TAGAAGAA-GTGACGGCGAAACTATTCAAA-ATCTTG-GGATCGTAAAAGAAGAGATTGT 1018
Query 987 TTAG 990
||||
Sbjct 1019 TTAG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5