BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15740.1 Length=990 Score E Sequences producing significant alignments: (Bits) Value Ahg931310 jgi|Araly1|931310|scaffold_303767.1 1256 0.0 Ahg931746 jgi|Araly1|931746|scaffold_304203.1 638 0.0 > Ahg931310 jgi|Araly1|931310|scaffold_303767.1 Length=1033 Score = 1256 bits (680), Expect = 0.0 Identities = 893/995 (90%), Gaps = 17/995 (2%) Strand=Plus/Plus Query 1 ATGTCTTCTATGCCAAATAAGTTCAATCCTCACTGTGATG--A-TAACAATCGTGGTTTT 57 ||||||||||| |||||||||||||||| ||| ||||||| | |||||||||||||||| Sbjct 21 ATGTCTTCTATTCCAAATAAGTTCAATCTTCATTGTGATGATACTAACAATCGTGGTTTT 80 Query 58 TCCTCCATCCAAATGAATCAAAATTCTC-AAATGGTTCATTCGAGGTTCATTACTTCGGA 116 ||||||| ||||||||||||||||| | |||| ||||| |||| ||||||||| ||||| Sbjct 81 TCCTCCAAACAAATGAATCAAAATTC-CAAAATAGTTCAATCGATGTTCATTACCTCGGA 139 Query 117 TCACACAAACCATGGTGATCTGTTTTCATCATCTCCTTCTTTTTCTTGTTTTCATAATTC 176 ||||||||||||||||||| ||||||| |||||||||||||| ||| |||||| ||||| Sbjct 140 TCACACAAACCATGGTGATTTGTTTTCCTCATCTCCTTCTTTAACTTTTTTTCAAAATTC 199 Query 177 ACATGCCTCTTCATCTTCATTTGGATTCCAAAATTCACATGTGGAAAATCATATGATGAA 236 ||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||| Sbjct 200 ACATGTTTCTTCATCTTCATTTGGATTTAAAAATTCACATGTGAAAAATCAAATGATGAG 259 Query 237 GAGAAACATAATTTCTGATGACAATTATTTTTCTATCACAAACAATCCTCATTTTACTC- 295 ||||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| | Sbjct 260 GAGAAACATAATTTCTGGTGACAATTATTTTCCTATAAAAAACAATCCTCATTTTAC-CA 318 Query 296 GAGTTTCTTTCACACAAACCATTACAAACAAATTTACAGCCATTGTTCCTACTAATACAC 355 |||||||||||||||||| ||||||||| | | ||| || ||||||||||||||||||| Sbjct 319 GAGTTTCTTTCACACAAAGCATTACAAATAGGTATACCGCTATTGTTCCTACTAATACAC 378 Query 356 TTGACGCTGTACAATATGATGCTCAACGTGTCAAACGTGCCATGAATCCCAAAACCAATA 415 ||||| ||||||||||||| |||||||||||||||||||||| || ||||||| |||| Sbjct 379 TTGACATTGTACAATATGATATTCAACGTGTCAAACGTGCCATGTATTCCAAAACTAATA 438 Query 416 TTTGGAATCCTATATTTTCTCCTCCAAATACTTTTGATAAACAATGCGAATTTTTGAATC 475 |||||||||||| ||||| ||||||||||| |||||||||||| || ||| ||||||||| Sbjct 439 TTTGGAATCCTAAATTTTTTCCTCCAAATATTTTTGATAAACAGTGTGAACTTTTGAATC 498 Query 476 CTAAACCTCTTAATGTCATTTTTCCGAGTCAAAATTCTGCATATCCTCAACATTTAGACA 535 |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||| Sbjct 499 CTAAACCTCTTAATGTCATTGTTCCGCGTCAAGATTCTGCATATTCTCAACATTTAGACA 558 Query 536 TGTTTTCCTTGTCATCAAAGCACAATC-ATGATCAACGTGTT-CTCCAAGATGG-TCGTT 592 ||||||| ||||||||||| ||||| | | | ||||||||| || ||| |||| || || Sbjct 559 TGTTTTCATTGTCATCAAAACACAA-CTACAACCAACGTGTTCCT-CAATATGGTTC-TT 615 Query 593 CTATGAAGAAAATCTTGAAACCAACCATA-TTTTTT-GAAGCAACTACTGATTACATTGA 650 | |||||||||||||||||||||||| | |||||| ||| ||| ||||||||| ||||| Sbjct 616 TTTTGAAGAAAATCTTGAAACCAACCA-AGTTTTTTGGAA-CAAGTACTGATTATATTGA 673 Query 651 GTCTCAAGAAAACGAGAAAAGTAACAATGATCACAATGATGGTAGGACACATAGTCTACC 710 |||| ||||||| |||||||||||| ||||||| |||||||| |||||||||||||||| Sbjct 674 GTCTGAAGAAAATGAGAAAAGTAACGATGATCAGTATGATGGTCGGACACATAGTCTACC 733 Query 711 ATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGCGTCTTTAATACTTCTCA 770 ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 734 ATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGCGTATTCGATACTTCTCA 793 Query 771 AAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAACAAGCGAAGAAAGAGAACA 830 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 794 AAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAACGAGCGAAGAAAGAGAACA 853 Query 831 GAGAATTCGTGCAAAGAACAAAAGAAAATTTTGTAAACTAAATCGTGAAATTAATGGTGA 890 ||| |||||||||||||||||||||||| |||||||||||||| |||||| ||||||| Sbjct 854 TAGACTTCGTGCAAAGAACAAAAGAAAATATTGTAAACTAAATCACGAAATTCATGGTGA 913 Query 891 GCCTCAAAAGACCAAACAAGAGGATGTGGCCAACAACAGTGAAAAAAGTGACGATAAAAC 950 | |||||||| | |||||||||||||| | ||||||| ||||||||| |||||||||| | Sbjct 914 GTCTCAAAAGTCTAAACAAGAGGATGTAGTCAACAACGGTGAAAAAAATGACGATAAAGC 973 Query 951 TTTCCAACATCTTGTGGTCGTAAAAGAAGAGCTTG 985 |||||||||||||||| |||||||||||||||||| Sbjct 974 TTTCCAACATCTTGTGATCGTAAAAGAAGAGCTTG 1008 > Ahg931746 jgi|Araly1|931746|scaffold_304203.1 Length=1044 Score = 638 bits (345), Expect = 0.0 Identities = 766/964 (79%), Gaps = 49/964 (5%) Strand=Plus/Plus Query 54 TTTTTCCTCCATCCAAATGAATCAAAATTCTCAA-ATGGTTC-ATTCGAGGTTCATTACT 111 ||||| | ||||| |||||||||| || || ||| ||||||| | |||| ||||| | | Sbjct 81 TTTTTTC-CCATCGAAATGAATCACAACTC-CAAGATGGTTCGA-TCGATGTTCACTGCA 137 Query 112 TCGGATCACACAAACCATGGTGATCTGTTTTCATCATCTCCTTCTTTTTCTTGTTTTCAT 171 | ||| | |||||| ||||| ||||||| || ||||||||| ||||||||| || Sbjct 138 TATGATTGTTCGAACCATAGTGATTTGTTTTCGTCTTCTCCTTCTATTTCTTGTTACCAA 197 Query 172 AATTCACATGCCTCTTCATCTTCATTTGGATTCCAA-AATTCACATGTGGAAAATCATAT 230 |||||||||| |||||||||||| |||||||| || ||||||||| || || ||||| Sbjct 198 AATTCACATGTCTCTTCATCTTCCTTTGGATT-TAACAATTCACATATGCCCAACCATAT 256 Query 231 GATGAAGAGAAACA-T-A--A--TTTCTGATGA-CAATTATTTTTCTATCACAA-ACAAT 282 ||||| |||||||| | | | |||||| | | | ||||||| |||| | || | ||| Sbjct 257 GATGAGGAGAAACATTGATTATGTTTCTGGT-ACCGATTATTTGCCTATTA-AAGATAAT 314 Query 283 CCTCATTTTACTCGAGTTTCTTTCACACAAACCATTACAAACAAATTTACAGCCATTGTT 342 |||||| ||||| ||||||||||||| |||||||| || || | | || | |||| | Sbjct 315 CCTCATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCT 374 Query 343 CCTACTAATACACTTGACGCTGTACAATATGATGCTCAACGTGTCAAACGTGCCATGAAT 402 ||| | ||||||||||| ||||| ||||||||| | |||||||||||||||||||| || Sbjct 375 CCTGCCAATACACTTGATGCTGTTCAATATGATATTGAACGTGTCAAACGTGCCATGGAT 434 Query 403 CCCAAAACCAATATTTGGAATCCTATATTTTC-TCCTCCAAATACTT-TTGATAAACAAT 460 | ||| |||||||||||||||||| ||| | | |||||||| || |||||||||||| Sbjct 435 TCTAAACCCAATATTTGGAATCCTA-CTTTACATTCTCCAAAT-TTTCTTGATAAACAAT 492 Query 461 GCGA-ATTTTTGAATCCTAAACCTCTTAATGTCATTTTTCCGAGTCAAAATTCTGCATAT 519 || | | || ||| |||| | ||||||||||||||||| ||| | |||||||||| | || Sbjct 493 GCCAGA-TTCTGACTCCTGAGCCTCTTAATGTCATTTTCCCGCGCCAAAATTCTGTAGAT 551 Query 520 CCTCAACATTTAGACATGTTT-TCCTTGTCATCAAAGCACAATCATGATCAACGT-GTTC 577 | |||||||||| || | ||| ||||||||||| ||||| || ||||||||| | || Sbjct 552 CGTCAACATTTAAAC-TTTTTCTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTG 610 Query 578 TCCAAGATGGTCGTTCTAT-GAAGAAAATCT-TGAAACCAACCATATTTTT-TGAAGCAA 634 | || || ||||| ||| | ||| ||| ||| | |||||||||| ||||| || || Sbjct 611 T-CATGAGGGTCGATCTTTGGAA-AAAGTCTCT-AAACCAACCA-CTTTTTCCAAAAAAA 666 Query 635 CTACTGATTACATTGAGTCTCAAGAAAACGAGAAAAGTAACAATGATCACA-ATGATGGT 693 ||| |||||| || | | | || |||||||||||| | || ||||||| | |||||||| Sbjct 667 CTAATGATTATATACATTGTGAAAAAAACGAGAAAATTGACGATGATCA-ATATGATGGT 725 Query 694 AGGACACATAGTCTACCATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGC 753 |||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || Sbjct 726 CGGACACATAGTCTACCGTATGAGAAATACGGTCCATATACATGTCCCAAATGCAACGGT 785 Query 754 GTCTTTAATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAAC- 812 || ||||||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct 786 GTATTTAATACTTCTCAACAATTTGCTGCACATATGTCATCTCACTACAAGGGCGAGACG 845 Query 813 AAGCGAAGAAAGAGAACAGAGAATTCGTGCAAAGAACAAAAGAAAATTTTGTAAACTAAA 872 || | |||||||||| || ||| ||||||||| ||| |||||||||| | ||||| | || Sbjct 846 AA-CAAAGAAAGAGATCAAAGATTTCGTGCAAGGAATAAAAGAAAATATCGTAAATTGAA 904 Query 873 TCGTGAAAT-TAATGGTGAGCCTCAAAAGACCAAACAAGAGGATGTG-GCCAACAACAG- 929 || |||| | || ||| || ||||||||| ||||| ||| |||| | | || | || Sbjct 905 TCCTGAAGTGTA-TGGGGAATCTCAAAAGATCAAACCAGAAGATG-GAGTTAATAG-AGG 961 Query 930 T-GAAAAAAGTGACGATAAAACT-TTCCAACATCTTGTGG-TCGTAAAAGAAGAGCTTGT 986 | ||| || |||||| ||||| ||| || |||||| || |||||||||||||| |||| Sbjct 962 TAGAAGAA-GTGACGGCGAAACTATTCAAA-ATCTTG-GGATCGTAAAAGAAGAGATTGT 1018 Query 987 TTAG 990 |||| Sbjct 1019 TTAG 1022 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36788614905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5