BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15760.1 Length=1268 Score E Sequences producing significant alignments: (Bits) Value Ahg480427 jgi|Araly1|480427|fgenesh2_kg.3__3128__AT2G15760.1 1659 0.0 > Ahg480427 jgi|Araly1|480427|fgenesh2_kg.3__3128__AT2G15760.1 Length=1175 Score = 1659 bits (898), Expect = 0.0 Identities = 1089/1179 (92%), Gaps = 22/1179 (2%) Strand=Plus/Plus Query 14 ctctctctcCTTGT-ACCTCTCTAAAGTCAAGCTTTTCGTCTAAAAGGGAACACCTTACA 72 |||||||| ||| | | ||||||||||||||||||||| ||| |||||||||||||| || Sbjct 1 CTCTCTCTTCTT-TAATCTCTCTAAAGTCAAGCTTTTCTTCTGAAAGGGAACACCTTCCA 59 Query 73 ACAACCAAGAAAGGCAAAAGAAGAACAGAGCATCCAAAGAACAAACCATTAATGGAGATA 132 | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 60 AGAACCAAGAAAGGCAAAATAAGAACAGAGCATCCAAAGAACAACCCATTAATGGAGATA 119 Query 133 GAAGTGGCAGAAGCAGCAGCAGCAGAACTCAATTTTGACAGCACAACTTCGTCTCCTTAC 192 |||||||| || |||| |||||||||||||||| |||||||||||||| ||||||||| Sbjct 120 GAAGTGGC---AGTAGCATCAGCAGAACTCAATTTCGACAGCACAACTTCTTCTCCTTAC 176 Query 193 ATAACAGCTCCTTCGAGCCCAACTCGATTTGG---CAACAA------CTTTTTCAGTGCA 243 |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| Sbjct 177 ATAACAGCTCCTTCAAGCCCAACTCGATTTGGTAACAACAATGTTTTCTTTTTCAGTGCA 236 Query 244 CCAACAAGCCCTTCTCCTTCCACTTCCTCTAACATACCTTTTGATTGGGATGACCAACCA 303 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CCCACAAGCCCTTCTCCTTCCACTTCCTCTAACATACCTTTTGATTGGGATGACCAACCA 296 Query 304 AGAACTCCCAAGAAGAGATCAGCCATCGGTTTCGAAGACGATTTTGAGTTCAATTTCAGT 363 ||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 297 AGAACTCCCAAAAAGAGATCAGCCAGCGATTTCGAAGACGATTTTGAGTTCAATTTCAGT 356 Query 364 GGTCAGTTGGAGAAAACTTCTTTCTCTGCAGCTGATGAGCTCTTTGATGGAGGAAAGATT 423 ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 357 GGTCAATTGGAGAAAACTTCTTTCTCTGCCGCCGATGAGCTCTTTGATGGAGGAAAGATT 416 Query 424 CGTCCTTTAAGGACACCTCTCACTCCTACTGTTTCTTCTCCTAGATCTAGGGGTCTTGAG 483 || |||||| || |||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 417 CGACCTTTAGGGCCACCACTCACTCCTACTGTTTCTTCTCCTAGATCTAGGGATCTTGAG 476 Query 484 ATAGAAGATTCGGATGATCAGAAAGATCGAGGAAGAGACCGGTCACCAGGATCTTCTTCT 543 ||||||| ||| |||||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct 477 ATAGAAGTTTCCGATGATCAAAAAGATCGAGGAAGAGATCGGTCTCCGGGATCTTCTTCT 536 Query 544 TCGCGTTATGATCGTAAAGGAAGCCGTTCTATGTCTCCGTTAAGGGTTTCAGACATTATG 603 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 537 TCGCGTTATGATCGTAAAGGAAGCCGTTCTATGTCTCCGTTGAGAGTTTCAGACATTATG 596 Query 604 GTTGATGAAGAAGAAGAAGTACAATCAACAAAAATGGTTGCTTCCAACACAAGTAATCAA 663 |||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 597 GTTGGTGAAGAAGAAGAAGTACAATCAACAAAATTGGTTGCTTCCAACACAAGCAATCAA 656 Query 664 AAATCCTCTGTTTTCTTGTCAGCAATTCTGTTCCCTGGTCGTGCATATAAGAAGTGGAAA 723 |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 657 AAATCCTCTGTTTTCTTGTCTGCTATTCTGTTCCCTGGTCGAGCATATAAGAAGTGGAAA 716 Query 724 CTCAAAGATCTGTTGCTATTCAGGAGTGCATCGGATGGAAGACCGATTCCGACCAAAGAG 783 ||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||| Sbjct 717 CTCAAAGATCTATTGCTGTTCAGGAGCGCATCGGATGGAAGACCGGTTCCGACCAAAGAG 776 Query 784 TCTTTAAATAGGTACGATATACTTACAAAGAAAGATGCCGAGGAAGTGAGAAATTCGAGT 843 || || ||||| ||||||||||||||||||||||| |||||||| |||| |||||||||| Sbjct 777 TCATTGAATAGATACGATATACTTACAAAGAAAGAGGCCGAGGATGTGAAAAATTCGAGT 836 Query 844 ATCAGATCGAGAGAGAGTTGTGAATCTTCGGTGTCTAGGTCAAGGAGGAGGAACGGAGCG 903 ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 837 ATCAGGTCGAGAGAGAGTTGTGAGTCGTCGGTGTCTAGGTCAAGGAGGAGGAACGGAGCC 896 Query 904 GTGGTTTCGGCTCACGAGATGCATTACACTGAGAACAGAGCAGTATCGGAAGAATTGAAG 963 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 897 GTGGTTTCGGCTCACGAGATGCATTACACTGAGAACAGAGCCGTGTCGGAGGAATTGAAG 956 Query 964 AGGAAGACATTCTTGCCGTACAAGCAAGGCTGGTTAGGCTGCTTAGGGTTTAACCCTGCG 1023 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 957 AGGAAGACATTCTTGCCGTACAAGCAAGGCTGGTTAGGCTGCTTAGGGTTTAATCCTGCG 1016 Query 1024 GTCAATGAAATTGCTAGAGTTGGGTCATTGTCACGTGCTTCCTCTTGATCCCTCTCGCAC 1083 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 1017 GTCAATGAAATTGCAAGAGTTGGGTCATTGTCACGTGCTTCCTCTTGATCCCTCTTGTAC 1076 Query 1084 tttttttttGTCCTAA-T-CT-AT-TATT-T--ATTCACTTTTTT-GGTGGATTTAAATG 1135 |||||||||| | || | || || |||| | |||| ||||||| ||||| |||||||| Sbjct 1077 TTTTTTTTTGAACAAAGTTCTTATATATTATTTATTCGCTTTTTTTGGTGGCTTTAAATG 1136 Query 1136 TGGTGTTGAGGTTCCATCAAATTGATGGGAAAATATGAT 1174 ||||| |||||||||||||||||||||| |||| ||||| Sbjct 1137 TGGTGGTGAGGTTCCATCAAATTGATGGAAAAAGATGAT 1175 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47386785831 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5