BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15760.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480427 jgi|Araly1|480427|fgenesh2_kg.3__3128__AT2G15760.1 1659 0.0
> Ahg480427 jgi|Araly1|480427|fgenesh2_kg.3__3128__AT2G15760.1
Length=1175
Score = 1659 bits (898), Expect = 0.0
Identities = 1089/1179 (92%), Gaps = 22/1179 (2%)
Strand=Plus/Plus
Query 14 ctctctctcCTTGT-ACCTCTCTAAAGTCAAGCTTTTCGTCTAAAAGGGAACACCTTACA 72
|||||||| ||| | | ||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1 CTCTCTCTTCTT-TAATCTCTCTAAAGTCAAGCTTTTCTTCTGAAAGGGAACACCTTCCA 59
Query 73 ACAACCAAGAAAGGCAAAAGAAGAACAGAGCATCCAAAGAACAAACCATTAATGGAGATA 132
| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 60 AGAACCAAGAAAGGCAAAATAAGAACAGAGCATCCAAAGAACAACCCATTAATGGAGATA 119
Query 133 GAAGTGGCAGAAGCAGCAGCAGCAGAACTCAATTTTGACAGCACAACTTCGTCTCCTTAC 192
|||||||| || |||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 120 GAAGTGGC---AGTAGCATCAGCAGAACTCAATTTCGACAGCACAACTTCTTCTCCTTAC 176
Query 193 ATAACAGCTCCTTCGAGCCCAACTCGATTTGG---CAACAA------CTTTTTCAGTGCA 243
|||||||||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 177 ATAACAGCTCCTTCAAGCCCAACTCGATTTGGTAACAACAATGTTTTCTTTTTCAGTGCA 236
Query 244 CCAACAAGCCCTTCTCCTTCCACTTCCTCTAACATACCTTTTGATTGGGATGACCAACCA 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CCCACAAGCCCTTCTCCTTCCACTTCCTCTAACATACCTTTTGATTGGGATGACCAACCA 296
Query 304 AGAACTCCCAAGAAGAGATCAGCCATCGGTTTCGAAGACGATTTTGAGTTCAATTTCAGT 363
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 297 AGAACTCCCAAAAAGAGATCAGCCAGCGATTTCGAAGACGATTTTGAGTTCAATTTCAGT 356
Query 364 GGTCAGTTGGAGAAAACTTCTTTCTCTGCAGCTGATGAGCTCTTTGATGGAGGAAAGATT 423
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 357 GGTCAATTGGAGAAAACTTCTTTCTCTGCCGCCGATGAGCTCTTTGATGGAGGAAAGATT 416
Query 424 CGTCCTTTAAGGACACCTCTCACTCCTACTGTTTCTTCTCCTAGATCTAGGGGTCTTGAG 483
|| |||||| || |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 CGACCTTTAGGGCCACCACTCACTCCTACTGTTTCTTCTCCTAGATCTAGGGATCTTGAG 476
Query 484 ATAGAAGATTCGGATGATCAGAAAGATCGAGGAAGAGACCGGTCACCAGGATCTTCTTCT 543
||||||| ||| |||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 477 ATAGAAGTTTCCGATGATCAAAAAGATCGAGGAAGAGATCGGTCTCCGGGATCTTCTTCT 536
Query 544 TCGCGTTATGATCGTAAAGGAAGCCGTTCTATGTCTCCGTTAAGGGTTTCAGACATTATG 603
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 537 TCGCGTTATGATCGTAAAGGAAGCCGTTCTATGTCTCCGTTGAGAGTTTCAGACATTATG 596
Query 604 GTTGATGAAGAAGAAGAAGTACAATCAACAAAAATGGTTGCTTCCAACACAAGTAATCAA 663
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 597 GTTGGTGAAGAAGAAGAAGTACAATCAACAAAATTGGTTGCTTCCAACACAAGCAATCAA 656
Query 664 AAATCCTCTGTTTTCTTGTCAGCAATTCTGTTCCCTGGTCGTGCATATAAGAAGTGGAAA 723
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 657 AAATCCTCTGTTTTCTTGTCTGCTATTCTGTTCCCTGGTCGAGCATATAAGAAGTGGAAA 716
Query 724 CTCAAAGATCTGTTGCTATTCAGGAGTGCATCGGATGGAAGACCGATTCCGACCAAAGAG 783
||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 717 CTCAAAGATCTATTGCTGTTCAGGAGCGCATCGGATGGAAGACCGGTTCCGACCAAAGAG 776
Query 784 TCTTTAAATAGGTACGATATACTTACAAAGAAAGATGCCGAGGAAGTGAGAAATTCGAGT 843
|| || ||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 777 TCATTGAATAGATACGATATACTTACAAAGAAAGAGGCCGAGGATGTGAAAAATTCGAGT 836
Query 844 ATCAGATCGAGAGAGAGTTGTGAATCTTCGGTGTCTAGGTCAAGGAGGAGGAACGGAGCG 903
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 837 ATCAGGTCGAGAGAGAGTTGTGAGTCGTCGGTGTCTAGGTCAAGGAGGAGGAACGGAGCC 896
Query 904 GTGGTTTCGGCTCACGAGATGCATTACACTGAGAACAGAGCAGTATCGGAAGAATTGAAG 963
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 897 GTGGTTTCGGCTCACGAGATGCATTACACTGAGAACAGAGCCGTGTCGGAGGAATTGAAG 956
Query 964 AGGAAGACATTCTTGCCGTACAAGCAAGGCTGGTTAGGCTGCTTAGGGTTTAACCCTGCG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 957 AGGAAGACATTCTTGCCGTACAAGCAAGGCTGGTTAGGCTGCTTAGGGTTTAATCCTGCG 1016
Query 1024 GTCAATGAAATTGCTAGAGTTGGGTCATTGTCACGTGCTTCCTCTTGATCCCTCTCGCAC 1083
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1017 GTCAATGAAATTGCAAGAGTTGGGTCATTGTCACGTGCTTCCTCTTGATCCCTCTTGTAC 1076
Query 1084 tttttttttGTCCTAA-T-CT-AT-TATT-T--ATTCACTTTTTT-GGTGGATTTAAATG 1135
|||||||||| | || | || || |||| | |||| ||||||| ||||| ||||||||
Sbjct 1077 TTTTTTTTTGAACAAAGTTCTTATATATTATTTATTCGCTTTTTTTGGTGGCTTTAAATG 1136
Query 1136 TGGTGTTGAGGTTCCATCAAATTGATGGGAAAATATGAT 1174
||||| |||||||||||||||||||||| |||| |||||
Sbjct 1137 TGGTGGTGAGGTTCCATCAAATTGATGGAAAAAGATGAT 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5