BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15780.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480428 jgi|Araly1|480428|fgenesh2_kg.3__3129__AT2G15780.1 1310 0.0
> Ahg480428 jgi|Araly1|480428|fgenesh2_kg.3__3129__AT2G15780.1
Length=951
Score = 1310 bits (709), Expect = 0.0
Identities = 881/959 (92%), Gaps = 32/959 (3%)
Strand=Plus/Plus
Query 1 AATCTCTTATCAAATAACTAACAATTCACAAGAAGAAACAATGGTACACTCTCGTTTTTT 60
|||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1 AATCACTTATCAAATAGCTAACAATTCACAAGAAGAAGCAATGGCACACTCTCGTTTTTT 60
Query 61 AAACGTTGTTTTAGTCCTAGTGACCATTGCTTCCATATTCTCCACATTTGCCGAGGCCAA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GAACGTTTTTTTAGTCCTAGTGACCATTGCTTCCATATTCTCCACATTTGCTGAGGCCAA 120
Query 121 TAGGGGCTTTGGGTGGGGTTGGGGTGGACACTCCAACAATTCAAGTGGTTCAGGTTCAAA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TAGGGGCTTTGGGTGGGGTTGGGGTGGGCACTCCAACAATTCAAGTGGTTCAGGTTCAAA 180
Query 181 CTCGAGGTCCGGA------TGGGGTTGGGGTTGGGGTCAAGGCTCCAACTATTCAAGTGG 234
||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CTCAAGGTCCGGATGGGGTTGGGGTTGGGGTTGGGGTCATGGCTCCAACTATTCAAGTGG 240
Query 235 TTCAGCTTCAACCCCAGGGTCAGGATGGGGTTTCGGCTCTAGTCGAAACGGCTCAGGCTG 294
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 241 TTCAGGTTCAACCCCAGGGTCAGGATGGGGTTGGGGCTCTAGCCGAAACGGCTCAGGCTG 300
Query 295 GGGTTGGGGTTGGGGCGGGGTTCCCAACAATACACACAGCTCAGGG-TCTGGCGGCTC-- 351
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||
Sbjct 301 GGGTTGGGGTTGGGGCGGGGTTCCCAACAATACACACAACTC-GGGATCTGGTGGCTCGG 359
Query 352 ----GGGTTGGGGCATGGGGCCTAACAACAATTACAGCTCGGGATCTGGCGGCTCGGGTT 407
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 360 GTTGGGGTTGGGGCATGGGTCCTAACAACAATTACAGCTCAGGATCTGGAGGCTCGGGTT 419
Query 408 CGGGCTGGGGATATGGAGGTCATTCAAAAAACTATAATGCCACCTACAATGGACCTAGAA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGGGCTGGGGATATGGAGGTCATTCAAAAAACTATAATGCCACCTACAATGGACCTAGAA 479
Query 468 AGATCATAGTCGGTGGAGACAAAGAGTGGACTTATGGAT-TCAATTACGCTGACTGGGCT 526
|||| ||||||||||||||||||||||||| |||||| | |||| || || || |||||
Sbjct 480 AGATTATAGTCGGTGGAGACAAAGAGTGGAATTATGG-TGTCAACTATGCCGAGTGGGCG 538
Query 527 TCTAAGACTGCTCCATTCTTTCTCAATGACATACTTGTTTTCAAATACAACCCACCAGCC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTAAGACTGCTCCATTCTTTCTCAATGACATACTTGTTTTCAAATACAACCCACCAGCC 598
Query 587 CCGTTCACGCACAGCGTTTACTTGCTTCCGAACCCATCGAGTTATGAAAAGTGTGACGTG 646
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 599 CCGTTCACGCACAGCGTCTACTTGCTTCCAAACCCATCGAGCTATGAAAAGTGTGACGTG 658
Query 647 AAGAAAGGCAAAATGATTGCGTCTCCGAAGCAAGGTGCTGGAAAAGGCTTTGAGTTTGTT 706
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 659 AAGAAAGGCAAAATGATTGCATCCCCGAAGCAAGGTGCGGGAAAAGGCTTTGAGTTTGTT 718
Query 707 CTAAAACAGATGA-AGCCTTACTACATTTCGTGTGGCGAGCATGACGGTGCTCATTGCAG 765
||||||||||||| | ||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 719 CTAAAACAGATGAGA-CCTTACTACATTTCGTGCGGGGAGCATGATGGTGCTCACTGCAA 777
Query 766 CAATGGTACCATGAAGTTCACCGTCATGCCCATGCTACCCCGTTGGTAATT-TGGTGGTA 824
||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 778 CAACGGTACCATGAAGTTCACCGTCATGCCCATGCTACCCCGTTGGTAATGATG-TGGTA 836
Query 825 TTAAATCCAATG-C----T-AAAGTATCAAACATTAGGtttttgtttt-gtttttGTGTC 877
||||||||||| | | ||||||||||||||| || |||| ||| ||| |||||||
Sbjct 837 TTAAATCCAATTTCAACGTTAAAGTATCAAACATT-GGATTTTCATTTCGTTATTGTGTC 895
Query 878 GTCAATAAATGAGATTACCATTATTTACGTG-CGTTATACCATATTCACATTTTGTTGG 935
|||||||||||||| |||||||||||| ||| ||| || | ||||||||||||||||||
Sbjct 896 GTCAATAAATGAGACTACCATTATTTATGTGTCGT-AT-C-ATATTCACATTTTGTTGG 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5