BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15820.1
Length=2744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343169 jgi|Araly1|343169|fgenesh1_pg.C_scaffold_3002932 3655 0.0
> Ahg343169 jgi|Araly1|343169|fgenesh1_pg.C_scaffold_3002932
Length=2526
Score = 3655 bits (1979), Expect = 0.0
Identities = 2294/2446 (94%), Gaps = 21/2446 (1%)
Strand=Plus/Plus
Query 31 ATGATTGTTACCGGAGCTTGCGACTTCTCTTCATCATTCTCCCTCGCCTCTTCCTCCTCC 90
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1 ATGATTGTTACCGGAGCTTGCGACTTCTCTTCATCACTCTCCGTCGCCACTTCCTCCTCC 60
Query 91 TCCACCGTCTCCGTCACAACCTTCAACA--T--T-TC-CT-CTCT-T-TCCTCTAACCC- 140
||| |||||||||||||||||||||||| | | || || |||| | |||||||||||
Sbjct 61 TCCGCCGTCTCCGTCACAACCTTCAACATTTCCTCTCTCTCCTCTCTCTCCTCTAACCCT 120
Query 141 --CAACATCATCAATTCCAGCTCAACTCTCTTCCGTTCCCTTTCCTTCTCCCTTATCCGC 198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACATCATCATCAATTCCAGCTCAACTCTCTTCCGTTCCCTTTCCTTCTCCCTTATCCGC 180
Query 199 CACCGCAGCAGCTACTCACGTCGCTCTCTCCGCCGTCTCTCTATCCACACAGTTCATGGA 258
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATCGCAGCAGCTACTCTCGTCGCTCTCTCCGCCGTCTCTCTATCCACACAGTTCATGGA 240
Query 259 AACAAAACCCAATTCTTCTCTCACTCGTCTACACGAACTCCACCACTTTTCACGGCTAAT 318
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 241 AACAAAACCCAATTCTTCTCTCACTCTTCTACGCGAACTCCACCACTTTTCACGGCTAAT 300
Query 319 TCCACAGCCCAACGAAGCGGGACTTTCGTCGAACACCTTACAGGCATTACAGAATCGGAA 378
| | | || |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TACGCTGCTCAACGATGCGGGACTTTCGTCGAACACCTTACAGGCATTACAGAATCGAAA 360
Query 379 GAAGGAATCAGCGAAGCCAACGGTTTCGGTGATGTAGAGTCTGCTAGGAACGACATAAGA 438
||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 361 GAAGGAAGCAGCGAAGCCAACGATTTCGGTGATGTAGAGTCTGCTAGGAACGATATAAGG 420
Query 439 AACGTCGCGACTCGTAGAATAGAGACGGAGTTTGAAGTTAGAGAATTGGAAGAGTTGCCT 498
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGTTACGACTCGTAGAGTAGAGACGGAGTTTGAAGTTAGAGAATTGGAAGAGTTGCCG 480
Query 499 GAGGAATGGCGACGCTCGAAGCTAGCTTGGCTGTGTAAAGAGGTTCCAACGCATAAGGCC 558
|||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 481 GAGGAATGGCGACGGTCGAAGCTAGCGTGGCTGTGTAAAGAAGTTCCGACGCATAAGGCC 540
Query 559 GTGACGCTTGTGAGACTCTTGAATGCTCAGAAGAAATGGGTTCGTCAAGAGGACGCTACT 618
|||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||
Sbjct 541 GTGACGCTTGTGAGGCTATTGAATGCTCAGAAGAAATGGGTTCGTCAAGAAGATGCTACT 600
Query 619 TACATCTCTGTTCATTGTATGCGAATTCGTGAGAACGAAACTGGATTCAGGGTGTATAGA 678
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 TACATCGCTGTTCATTGTATGCGGATTCGTGAGAACGAAACTGGATTCAGGGTGTATAGA 660
Query 679 TGGATGACACAACAGAATTGGTACCGGTTTGATTTCGGGTTAACGACGAAGCTAGCTGAA 738
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 661 TGGATGACACAGCAGAATTGGTACCGGTTTGATTTCGGGTTAGCGACGAAGCTAGCTGAT 720
Query 739 TACTTGGGGAAAGAACGGAAATTTACGAAATGTCGAGAGGTATTTGATGATGTTTTGAAT 798
|||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 721 TACTTGGGCAAAGAACGGAAATTTACGAAATGCCGGGAGGTATTTGATGATATTTTGAAT 780
Query 799 CAAGGACGTGTACCAAGTGAATCTACATTTCATATTCTTGTAGTTGCGTATCTAAGTAGC 858
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 CAAGGGCGTGTTCCAAGTGAATCTACATTTCATATTCTTGTAGTTGCATATCTAAGTAGC 840
Query 859 TTATCAGTAGAAGGTTGTCTCGAGGAAGCGTGTAGTGTTTACAATAGAATGATTCAACTT 918
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 TTATCAGTCGAAGGCTGTCTCGAGGAAGCGTGTAGCGTTTACAATAGAATGATTCAACTT 900
Query 919 GGAGGTTACAAACCGCGTCTTAGTCTGCATAACTCTTTGTTTAGAGCTTTGGTTAGTAAA 978
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 901 GGAGGTTACAAGCCGCGTCTTAGTCTGCATAATTCTTTATTTAGAGCTTTGGTAAGCAAA 960
Query 979 CAAGGAGGGATTCTGAATGATCAGCTTAAGCAAGCAGAGTTTATCTTTCACAATGTTGTG 1038
| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 CGAGGAGGGATTTTGAATGATCAGCTTAAGCAAGCCGAGTTTATCTTTCACAATGTTGTG 1020
Query 1039 ACAACCGGGCTTGAGGTTCAGAAGGATATTTATAGTGGATTGATCTGGCTGCATAGTTGT 1098
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1021 ACAACCGGGCTTGAGGTTCAGAAGGATATTTATAGCGGATTAATCTGGCTGCATAGTTGC 1080
Query 1099 CAAGATGAAGTTGATATAGGTAGGATAAACTCTCTAAGAGAAGAGATGAAGAAGGCCGGT 1158
||||| |||||||| | || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1081 CAAGAAGAAGTTGACAAAGACAGGATTAACTCTCTAAGAGAAGAGATGAAGAAGGCGGGC 1140
Query 1159 TTTCAGGAGAGTAAAGAAGTTGTGGTATCGTTACTTAGAGCTTATGCAAAGGAGGGAGGT 1218
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1141 TTTCAGGAGAGTAAAGAAGTTGTGGTGTCGTTACTGAGAGCATATGCAAAGGAGGGAGGT 1200
Query 1219 GTGGAAGAAGTTGAGAGGACGTGGCTTGAATTGCTTGATTTAGATTGTGGTATACCTTCT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTGGAAGAAGTTGAGAGGACGTGGCTTGAATTGCTTGATTTAGATTGTGGTATACCTTCT 1260
Query 1279 CAGGCGTTTGTGTACAAAATAGAAGCTTATTCGAAAGTCGGCGATTTTGCGAAAGCTATG 1338
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 1261 CAGGCGTTTGTGTACAAAATGGAAGCTTATTCGAAAGTCGGTGATTTTGCGAAAGCTTTG 1320
Query 1339 GAGATATTTAGGGAGATGGAGAAGCATATAGGTGGTGCAACTATGTCTGGATACCATAAA 1398
|||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 1321 GAGATATTCAGGGAGATGGAGAAGCATTTAGGTGGTGCAACTGTGTCTGGATACCACAAA 1380
Query 1399 ATCATTGAGGTTCTATGTAAAGTCCAACAAGTGGAACTTGTGGAAACTCTCATGAAGGAG 1458
|||||||||||||||||||||||||| ||||||||| ||| |||| ||||| ||||||||
Sbjct 1381 ATCATTGAGGTTCTATGTAAAGTCCAGCAAGTGGAATTTGCGGAATCTCTCTTGAAGGAG 1440
Query 1459 TTTGAAGAAAGCGGGAAGAAGCCGCTTCTACCATCATTCATCGAAATAGCCAAAATGTAC 1518
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1441 TTTGAAGAAAGTGGGAAGAAGCCGCTTCTACCATCATACATCGAAATAGCCAAAATGTAC 1500
Query 1519 TTCGATTTGGGTTTACATGAGAAATTGGAGATGGCTTTTGTTCAGTGCTTGGAGAAATGC 1578
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1501 TTCGATTTGGGTTTACATGAGAAATTGGAGATGGCTTTTGTTGAGTGCTTGGAGAAATGC 1560
Query 1579 CAACCTAGCCAGCCTATATATAACATATATTTGGATTCATTGACTAAAAT-AGGCAACCT 1637
|||||||||||| ||||||||||||||||| ||||||||||| |||||| || ||||||
Sbjct 1561 CAACCTAGCCAGACTATATATAACATATATCTGGATTCATTGGTTAAAATCAG-CAACCT 1619
Query 1638 TGAGAAAGCAGGGGATGTCTTCAATGAAATGAAAAACAACGGGACAATCAATGTGAGTGC 1697
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1620 TGAGAAAGCAGGGGATGTCTTCAATAAAATGAAAAACAACGGGACAATCAATGTGAATGC 1679
Query 1698 TAGATCCTGCAACAGCCTTTTAAAGGGATACCTAGATTGTGGAAAACAAGTGCAGGCAGA 1757
|||||| ||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 1680 TAGATCGTGCAACAACCTTTTAAAAGGATACCTAGATTCTGGAAAACAAGTTCAGGCAGA 1739
Query 1758 GAGAATATATGATCTGATGAGAATGAAGAAATACGAAATCGAACCACCGCTTATGGAAAA 1817
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1740 GAGAATATATGATCTGATGAGATTGAAGAAATACGAAATCGAACCACCGCTTATGGAAAA 1799
Query 1818 GCTTGATTACATCCTGAGCTTGAAGAAAAAAGAGGTGAAGAAGAGACCGTTTAGCATGAA 1877
|||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||
Sbjct 1800 GCTTGATTACATCCTGAGCTTGAAGAAAAAAGAGCTGAAGAA-A--CCGTTAAGCATGAA 1856
Query 1878 GCTAAGCAAAGACCAGCGTGAGGTATTGGTAGGTTTGTTGTTAGGTGGCTTGCAAATCGA 1937
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1857 GCTAAGCAAAGACCAGCGTGAGGTATTGGTAGGTTTGCTGTTAGGTGGCTTGCAAATCGA 1916
Query 1938 ATCAGACAAAGAGAAGAAGAGCCACATGATCAAATTTGAATTTAGAGAAAATTCTCA-AG 1996
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1917 ATCTGACAAAGAGAAGAAGAGCCACATGATCAAATTTGAATTCAGAGAGAATTCTCAGAC 1976
Query 1997 CTCATCTGGTTCTTAAACAAAACATACATGACCAGTTCCGTGAGTGGTTGCATCCTTTGA 2056
| |||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||| |
Sbjct 1977 C-CATCTGATTCTTAAACAACACATACATGACCAGTTCCGCGAGTGGTTTCATCCTTTAA 2035
Query 2057 GCAATTTTCAGGAGGATATTATACCGTTCGAATTCTACTCCGTTCCCCATTCATACTTCG 2116
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 GCGATTTTCAGGAGGATATAATACCGTTCGAATTCTACTCCGTTCCCCATTCATACTTCG 2095
Query 2117 GGTTTTACGCTGAACATTACTGGCCAAAGGGTCAGCCAGAGATTCCAAAACTGATTCATC 2176
|||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 2096 GGTTTTACGCTGAACATTTCTGGCCCAAGGGTCAACCAGAGATTCCAAACCTGATCCATC 2155
Query 2177 GGTGGCTATCGCCACACTCACTCGCGTATTGGTACATGTACAGCGGCGTTAAAACATCAT 2236
||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2156 GGTGGCTCTCACCACACTCACTCGCATATTGGTACATGTACAGCGGCTTTAAAACATCAT 2215
Query 2237 CAGGAGACATTATCTTGAGATTGAAGGGAAGTCTCGAAGGTGTTGAGAAAGTAGTAAAGG 2296
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2216 CAGGAGACATTATCTTGAGATTGAAGGGAAGTCTAGAAGGTGTTGAGAAGGTAGTAAAGG 2275
Query 2297 CTCTTCA-AGCCAAATCTATGGAATGTCGAGTTAAGAAGAAAGGAAAAGTCTTCTGGATT 2355
||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 CTCTT-AGAGCCAAATCAATGGAATGTCGAGTTAAGAAGAAAGGAAAAGTCTTCTGGATC 2334
Query 2356 GGACTTCAGGGAACAAACTCAGCTTTGTTCTGGAAACTAATAGAGCCTCATGTGTTAGAG 2415
||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 2335 GGACTTCAGGGAACAAACTCAGCTTTGTTCTGGAACCTAATAGAGCCTTACGTGTTAGAG 2394
Query 2416 AACTTGAAAGAGCATTTGAAACCTGCTTCTGAATCACTGGACAATG 2461
|||||||||| |||||||||||| ||||||||||| ||| |||||
Sbjct 2395 GACTTGAAAGATCATTTGAAACCTCCTTCTGAATCAATGGGCAATG 2440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103529285910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5