BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G15830.1

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931324 jgi|Araly1|931324|scaffold_303781.1                        375    1e-103


> Ahg931324 jgi|Araly1|931324|scaffold_303781.1
Length=241

 Score =  375 bits (203),  Expect = 1e-103
 Identities = 230/243 (95%), Gaps = 2/243 (1%)
 Strand=Plus/Plus

Query  36   gagaaagagaaagaaagagaggatggtgataaagaaaaTCGAGCTATGCATAGAGATTAC  95
            |||||||||  ||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct  1    GAGAAAGAG--AGAAAGAGACGATGGTGATAAAGAGAATAGAGCTATGCATAGAGATTAC  58

Query  96   GAAGATAACAATGGAGTTCTTGGTGGTGGTGGCTGACGCCGTCACAATCTTCTTAAGGCA  155
            ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  59   GAAGATAGCAATGGAGTTCTTGGTGGTGGTGGCTGACGCCGTGACAATCTTCTTAAGGCA  118

Query  156  ATCTTCTCCACCTCCTCCGGCTCTACTCCGCCATGGTCTCTACTCATACTCTGCCTCCCC  215
            |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| 
Sbjct  119  ATCTTCTCCACCTCCTCCGGCTCTCCTCCGCCATGGCCTCTACTCTTACTCTGCCTCCCT  178

Query  216  TAATCCTCCTTCTTCCCATTACATCATCGGCTTTCTTCCCTAAGTTTGTAATCGTTTCGT  275
            ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  179  TAATCGTCCTTCTTCCCATTACGTCATCGGCTTTCTTCCCTAAGTTTGTAATCGTTTCGT  238

Query  276  TTT  278
            |||
Sbjct  239  TTT  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15643791490


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5